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Table 2 Results from GWAS for vertebral traits including chromosome, one megabase window and percent of genomic variation associated with the one megabase window for all significant associations (>1.0 %). Significant regions which were also suggestive (>0.4 %) for other traits are also listed. Potential candidate genes are presented in the last column

From: A study of vertebra number in pigs confirms the association of vertnin and reveals additional QTL

Chromosome

Mb

Thoracic variation

Lumbar variation

Thoracolumbar variation

Potential candidate gene symbol

4

114

1.11

  

MAB21L3

5

1

2.22

  

WNT7B

5

19

 

1.46

 

HOXC

5

70

1.80

 

0.40

TULP3

5

71

1.96

  

WNT5B

5

102

1.03

  

ALX1

6

81

2.35

  

MATN1

6

83

1.03

  

COL16A1

6

93

 

0.54

1.30

ARHGAP28

6

96

  

1.40

MYOM1

6

98

  

4.29

ADCYAP1

6

99

8.99

 

2.38

GATA6

6

102

  

1.13

ZNF521

6

103

0.59

 

2.68

ZNF521

6

146

2.86

  

LRP8

7

5

  

1.20

BMP6

7

54

1.04

  

ANKRD34C

7

103

 

1.20

 

VRTN

7

119

  

1.73

C14orf159

8

93

  

1.01

MAML3

8

98

  

1.06

PCDH10

9

14

 

2.30

 

TENM4

9

121

 

1.00

 

EZH2

9

124

 

6.03

 

TPK1

10

3

 

1.22

 

RGS18

11

25

  

1.49

AKAP11

12

19

1.28

1.25

 

MEOX1

12

24

  

10.26

HOXB

12

26

 

8.59

4.76

COL1A1

12

27

  

3.66

CHAD

12

34

  

6.21

MSI2

14

49

1.18

  

KREMEN1

14

75

1.38

  

SIRT1

14

80

  

1.23

UNC5B

15

30

 

1.18

 

CNTNAP5

16

18

 

4.80

 

CDH6

16

19

  

3.80

C5orf22

16

29

 

8.26

 

FGF10

16

30

 

1.08

 

FGF10

16

31

 

3.27

 

HCN1

16

45

 

1.20

 

RNF180

17

49

 

0.50

1.99

PTPRT

18

8

2.01

  

CLEC5A

18

48

 

2.36

 

FKBP14

18

50

17.35

2.70

 

HOXA

18

51

2.50

  

HOXA

18

54

2.80

  

RAMP3

X

41

4.72

  

CASK

X

140

1.58

  

MTMR1

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