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Table 2 Gene Ontology (GO) categories significantly overrepresented in CNVRs

From: Genome-wide identification of copy number variation using high-density single-nucleotide polymorphism array in Japanese Black cattle

 

GO categoriesa

gene number in CNVR

expected gene numberb

P valuec

Biological

response to stimulus

124

61.18

8.14E-12

Process

cellular defense response

51

15.71

1.25E-10

 

immune system process

120

61.91

4.61E-10

 

hemopoiesis

23

5.57

5.45E-06

 

immune response

51

22.36

1.83E-05

 

B cell mediated immunity

28

8.8

3.71E-05

 

extracellular transport

18

4.94

1.01E-03

 

response to interferon-gamma

14

3.1

1.14E-03

Cellular

immunoglobulin complex

20

0.98

4.32E-18

Component

protein complex

48

17.26

2.21E-08

 

macromolecular complex

50

21.76

4.03E-06

 

heterotrimeric G-protein complex

8

1.24

2.23E-03

 

MHC protein complex

10

2.03

2.53E-03

Molecular

antigen binding

20

0.98

1.35E-17

Function

ATPase activity, coupled to transmembrane movement of substances

9

1.46

3.40E-03

  1. aList of GO categories associated with overrepresentation of genes in the CNVRs (P < 0.05)
  2. bEnsembl gene list of 19,799 Bos taurus genes compared to the list of 717 genes in the CNVRs using PANTHER 9.0
  3. cBonferroni-corrected P value
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BMC Genomic Data

ISSN: 2730-6844

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