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Table 1 Primer pairs used to amplify the ε-LCY and β-LCY genes. The final two columns give the size of amplicons and the used high-throughput technology (CelI/agarose gel or DHPLC method). The partial denaturation DHPLC temperatures are reported in brackets

From: DHPLC technology for high-throughput detection of mutations in a durum wheat TILLING population

Gene

Genome

Exon region

Primer

Sequence (5’-3’)

Amplicon size (bp)

Method

β-LCY-6A

A

1

F4f

AGCCCTACAACCCGGGA

861

CelI/agarose gel

   

PC63r

CCCATGAAGATCTTGAGA

  
   

F4f

AGCCCTACAACCCGGGA

464

DHPLC (65.8 °C)

   

OP6r

GTGCGCGCCACCATGTACC

  

β-LCY-6B

B

1

PC71f

ATCCCGGCCACCGTCGTCCTGGA

990

CelI/agarose gel

   

PC62r

CCATGAAGATCTTGAGATGC

  
   

PC68f

GTCTTCATCGACGACCACA

761

DHPLC (65.1 °C)

   

OP6

GTGCGCGCCACCATGTACC

  

ε-Lcy-3A

A

4–9

PC35f

TGCTGAGAAGGTAGACATTCTATTG

1,193

CelI/agarose gel

   

PC40r

CAAGCATTGATGGACTGGAC

  
  

4–5

PC35fa

TGCTGAGAAGGTAGACATTCTATTG

650

DHPLC (57.8 °C)

   

PC130ra

CATTGCAGAAGCACACTGC

  
  

6–7–8

PC42fa

GGTTGATGTCTCGGTTGGAT

443

DHPLC (57.9 °C)

   

PC40ra

CAAGCATTGATGGACTGGAC

  
  

8–9

PC43f

TGGACAATATTTGCCTGGAA

385

DHPLC (57.5 °C)

   

PC37r

CTTGCGTACTCGCGAAAAA

  
   

PC35f

TGCTGAGAAGGTAGACATTCTATTG

1,527

Used for nested PCR

   

PC37r

CTTGCGTACTCGCGAAAAA

  

ε-Lcy-3B

B

4–9

PC42f

GGTTGATGTCTCGGTTGGAT

1,530

CelI/agarose gel

   

PC46r

GCATCCTTGCGTATTGTATTCTT

  
  

4

PC44fa

TTGCTGAGAAGGTACATTCGAT

336

DHPLC (58.4 °C)

   

PC140ra

GGCACTTTGTGCAGGGTTGG

  
  

5–6–7

PC41f

GAGGACCACGTGTTTGTGTG

584

DHPLC (58.1 °C)

   

PC143r

ACACCTGTGCAAGATAAACC

  
  

7–8–9

PC147f

TCCTTACCTAACACAGACCAGA

636

DHPLC (58.2 °C)

   

PC48r

AAAGATACGCATCCTTGCGTATT

  
  1. aPrimer combinations required nested PCR