Study on LOC426217 as a candidate gene for beak deformity in chicken

BMC Genomic Data

Table 6 Genotypes frequency comparison of all the loci between beak-deformed and normal birds

Loci	Trait	Genotype			χ ² value	P-value	Corrected P-value
Loci	Trait	AA	AB	BB	χ ² value	P-value	Corrected P-value
G-62 T	normal deformity	0	44	120	7.951	0.019	0.030*
G-62 T	normal deformity	3	28	140	7.951	0.019	0.030*
T24C	normal deformity	59	94	11	11.450	0.003	0.008**
T24C	normal deformity	41	101	29	11.450	0.003	0.008**
G36C	normal deformity	78	79	7	13.453	0.001	0.008**
G36C	normal deformity	54	95	22	13.453	0.001	0.008**
A192T	normal deformity	86	76	2	3.627	0.163	0.186
A192T	normal deformity	96	68	7	3.627	0.163	0.186
C204T	normal deformity	115	44	5	4.809	0.090	0.120
C204T	normal deformity	101	65	5	4.809	0.090	0.120
T222C	normal deformity	90	71	3	9.829	0.007	0.014*
T222C	normal deformity	85	69	17	9.829	0.007	0.014*
G285T	normal deformity	89	73	2	0.928	0.629	0.629
G285T	normal deformity	97	70	4	0.928	0.629	0.629
T363C	normal deformity	115	29	20	11.591	0.003	0.008**
T363C	normal deformity	140	10	21	11.591	0.003	0.008**

Note: χ ² value means the tested values of different genotypes between two groups. * means significant difference between two groups (P < 0.05). ** means highly significant difference between two groups (P < 0.01). Corrected P-value using Benjamini & Hochberg method [21] was used for the Bonferroni correction

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