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Table 2 PIC value among sub-groups of SNPs used in Fig. 3 and their genes identified by BLAST

From: The genetic diversity and structure of indica rice in China as detected by single nucleotide polymorphism analysis

SNP name Chr. Position MSU locus Cloned PIC
Local varieties Introduced varieties Improved varieties
seq-rs1556 3 10952279 LOC_Os03g19480 SDG718 0.1423 0.3201 0.3629
seq-rs1557 3 10965826 LOC_Os03g19510 OsClpP5 0.2103 0.3750 0.3739
seq-rs1558 3 10976468 LOC_Os03g19520 / 0.1521 0.3142 0.3629
seq-rs2740 6 3066751 LOC_Os06g06540 / 0.3423 0.3716 0.3233
seq-rs2741 6 3080670 LOC_Os06g06560 OsSSI 0.2179 0.3632 0.3233
seq-rs2750 6 3188215 LOC_Os06g06770 / 0.3655 0.1788 0.2824
seq-rs3198 7 4573557 LOC_Os07g08840 OsTRXh1 0.3250 0.2617 0.1948
seq-rs3199 7 4606495 LOC_Os07g08880 / 0.1544 0.0208 0.1462
seq-rs3200 7 4664150 LOC_Os07g08970 / 0.0000 0.1735 0.0213
seq-rs3201 7 4708187 LOC_Os07g09020 / 0.0000 0.0000 0.0000
seq-rs3202 7 4710622 LOC_Os07g09020 / 0.0593 0.1853 0.1462