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Table 1 The number of significant SNPs (- log10(p) ≥8.50) for each trait and how SNPs are divided into different consequences. SNPs were annotated with the variant effect predictor –tool [28]. One SNP can have more than one annotation

From: Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants

Trait Number of significant SNPs Intron variant Intergenic variant Downstream gene variant Upstream gene variant Synonymous variant Missense variant 3′ UTR variant Splice region variant, intron variant 5′ UTR variant Splice region variant, synonymous variant
Fat yield 3594 1641 1307 600 551 94 40 39 9 6 2
Milk yield 755 322 195 301 240 42 20 16 5 1 2
Prot. yield 85 50 14 32 12 3 3 1 1