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Table 1 Unique polymorphic sites that distinguish mtDNA haplotypes A to E

From: The relationship between mitochondrial DNA haplotype and the reproductive capacity of domestic pigs (Sus scrofa domesticus)

Reference sequence (Accession: AJ002189.1) position Haplotype A (Accession: KT279758) Haplotype B (Accession: KT261429) Haplotype C (Accession: KT279759) Haplotype D (Accession: KT279760) Haplotype E (Accession: KT261430) Overlapping gene ETC complex Amino acid change
2309    2309 insT    16S rRNA   
2312   2312 C > T     16S rRNA   
3060     3060 C > T   NADH1 I  
4179    4179 T > C    NADH2 I  
4897     4897 A > G   NADH2 I CAA05230.1:p.
Ile330Val
5585    5585 G > A    COI IV  
6053    6053 C > T    COI IV  
6212    6212 C > T    COI IV  
6359    6359 G > A    COI IV  
6879   6879 G > A       
7430    7430 A > G    COII IV  
8116 8116 A > G      ATPase 6 V CAA05234.1:p.I
le58Met
9758   9758 C > A     NADH3 I CAA05236.1:p.
Leu95Ile
10283    10283 T > C    NADH4 I  
10629     10629 C > T   NADH4 I  
12216 12216 G > C      NADH5 I  
13424     13424 T > C   NADH5 I CAA05241.1:p.
Ile556Thr
13529      13529 T > C NADH5 I CAA05241.1:p.
Ser591Phe
13898    13898 C > T    NADH6 I CAA05238.1:p.
Met64Ile
14378    14378 C > T    CYTB III  
14594    14594 G > A    CYTB III  
15212    15212 C > T    CYTB III  
15615      15615 C > T D-loop   
15675 15675 T > C      D-loop   
15758     15758 T > C   D-loop   
15840 15840 T > C      D-loop   
15936    15936 A > G    D-loop   
16127      16127 G > A D-loop