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Table 6 SNP markers identified in association mapping of P. sojae resistance

From: Phenotypic evaluation and genetic dissection of resistance to Phytophthora sojae in the Chinese soybean mini core collection

Isolate SNP markers Chr Position Naive GLM MLM Co-located traita
-log10 P R 2(%) -log10 P R 2(%) -log10 P R 2(%)
HLJ08-17 Q-15-0369188 15 48863575 5.08 10.35 4.12 8.35 2.85 6.27 New
P7063 Q-03-0266907 3 36634361 5.18 10.43 3.14 5.53 1.82 3.23 SCN [43]
P7063 Q-15-0128012 15 15532390 5.87 13.67 3.60 7.91 2.00 5.05 SCN [44]
H15 Q-16-0268535 16 33793393 2.33 5.02 3.14 6.48 3.03 6.87 BSR [45]
HeN08-35 BARC-014467-01559 16 3962328 3.58 7.48 3.37 6.93 3.17 7.00 New
HeN08-35 BARC-013645-01207 20 46624541 3.34 6.84 3.72 7.46 3.21 6.95 New
PNJ1 BARC-014527-01571 6 644565 3.45 7.28 3.44 7.17 3.44 7.65 SCN [46]
PNJ1 Map-3031 16 15093996 3.04 5.02 3.35 5.54 3.01 5.18 PRR [47, 48]
Pmg Map-1995 11 7904934 2.84 4.72 3.61 6.16 3.45 6.19 SSR [49]
Pmg BARC-042413-08254 16 35175092 4.64 9.90 3.97 8.45 3.68 8.33 RpsUN2 [50]
Pm28 Q-03-0059953 3 5147782 2.06 3.36 3.19 5.54 3.08 5.69 Rps1 [51]
Pm28 BARC-039153-07459 15 831324 5.00 10.67 4.79 10.14 3.68 8.60 PRR [52]
Pm31 Map-0715 4 46749591 1.09 2.35 3.64 7.42 3.09 6.86 New
Pm31 Map-1630 9 3157784 4.37 9.09 3.41 6.98 3.08 6.84 New
  1. aThe SNP co-located in one of the loci intervals as reported previously