Detection of differentially expressed candidate genes for a fatty liver QTL on mouse chromosome 12

Kobayashi, Misato; Suzuki, Miyako; Ohno, Tamio; Tsuzuki, Kana; Taguchi, Chie; Tateishi, Soushi; Kawada, Teruo; Kim, Young-il; Murai, Atsushi; Horio, Fumihiko

doi:10.1186/s12863-016-0385-2

BMC Genomic Data

Table 2 Genes differentially expressed between the livers of A/J mice and A/J-12^SM mice on chromosome 12

From: Detection of differentially expressed candidate genes for a fatty liver QTL on mouse chromosome 12

Probe ID	Gene symbol	Description	Position (bp)	GenBank	RefSeq	P-value	Fold change
1454898_s_at	Iah1	isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae)	21316392–21323605	AU016407	NM_026347	0.00020	4.803
1459274_at	Gpr135	G protein-coupled receptor 135	72069618–72070991	AV221890	NM_181752	0.00029	2.016
1429119_at	Iah1	isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae)	21316392–21323605	AK005287	NM_026347	0.00059	2.899
1416951_a_at	Atp6v1d	ATPase, H+ transporting, V1 subunit D	78842989–78861638	NM_023721	NM_023721	0.00157	0.492
1443933_at	Tc2n	tandem C2 domains, nuclear	101645443–101718523	BB548141	NM_028924	0.00163	0.371
1437608_x_at	Ywhaq	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	21390071–21417637	BB414446	NM_011739	0.00183	3.096
1430536_a_at	Erh	enhancer of rudimentary homolog (Drosophila)	80634022–80644341	BB071632	NM_007951	0.00218	0.827
1439045_x_at	Tc2n	tandem C2 domains, nuclear	101645443–101718523	AV376747	NM_028924	0.00245	0.038
1421139_a_at	Zfp386	zinc finger protein 386 (Kruppel-like)	116047724–116063360	NM_019565	NM_001004066 ; NM_019565	0.00267	0.292
1434437_x_at	Rrm2	ribonucleotide reductase M2	24708241–24714146	AV301324	NM_009104	0.00340	0.546
1446643_at	5330409N07Rik	RIKEN cDNA 5330409 N07 gene	98444816–98448333	BB022219	AK030416	0.00422	1.936
1418587_at	Traf3	Tnf receptor-associated factor 3	111166370–111267153	U21050	NM_011632	0.00423	0.861
1420491_at	Eif2s1	eukaryotic translation initiation factor 2, subunit 1 alpha	78861819–78887010	BC016497	NM_026114	0.00473	4.125
1428810_at	2700097O09Rik	RIKEN cDNA 2700097O09 gene	55045661–55080110	AK012621	NM_028314	0.00573	1.337
1447623_s_at	Prkd1	protein kinase D1	50341231–50649223	AV297026	NM_008858	0.00660	0.413
1449110_at	Rhob	ras homolog gene family, member B	8497763–8499985	BC018275	NM_007483	0.00676	1.746
1451146_at	Zfp386	zinc finger protein 386 (Kruppel-like)	116047724–116063360	BC004747	NM_001004066 ; NM_019565	0.00692	0.266
1434700_at	G2e3	G2/M-phase specific E3 ubiquitin ligase	51348061–51376986	BM123748	NM_001015099	0.00809	0.636
1444164_at	Prpf39	PRP39 pre-mRNA processing factor 39 homolog (yeast)	65036333–65063386	BG068268	NM_177806	0.00821	0.378
1447341_at	Esyt2	extended synaptotagmin-like protein 2	116281222–116373096	BE456208	NM_028731	0.00859	1.141
1454609_x_at	Irf2bpl	interferon regulatory factor 2 binding protein-like	86880703–86884814	BB770958	NM_145836	0.00928	1.464
1420830_x_at	Ywhaq	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	21390071–21417637	NM_011739	NM_011739	0.00944	1.573
1421430_at	Rad51b	RAD51 homolog B	79297351–79508656	NM_009014	NM_009014	0.00982	2.596
1436438_s_at	Dcaf5	DDB1 and CUL4 associated factor 5	80335847–80436601	BM234499	NM_177267	0.00984	1.410

Bold genes exist in the chromosomal region of Fl1sa. The fold change was calculated by the gene expression level in A/J-12^SM relative to that in A/J mice

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