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Table 3 Top 10 windows explaining the highest proportion of variance of age at first calving

From: Assessing the value of phenotypic information from non-genotyped animals for QTL mapping of complex traits in real and simulated populations

Rank

Bayes C

w1

w2

w3

SI

SII

SI

SII

SI

SII

Ch/Wi/pvar1

Ch/Wi/pvar

Ch/Wi/pvar

Ch/Wi/pvar

Ch/Wi/pvar

Ch/Wi/pvar

Ch/Wi/pvar

1st

18/5/0.40

18/5/0.23

18/5/0.23

18/5/1.13

18/5/1.17

13/71/4.59

23/27/9.66

2nd

8/107/0.34

5/16/0.19

17/50/0.21

8/107/0.84

5/115/1.16

23/27/3.26

12/3/6.43

3rd

17/50/0.29

8/107/0.19

23/25/0.20

6/108/0.80

8/107/1.08

12/3/3.24

13/71/3.42

4th

5/115/0.28

7/4/0.19

8/107/0.20

2/18/0.71

23/27/0.94

2/18/2.94

5/115/3.14

5th

7/4/0.27

17/50/0.18

7/4/0.18

22/2/0.68a

7/4/0.78

7/26/1.79

3/12/2.72

6th

3/28/0.24

23/28/0.17

23/29/0.18

7/4/0.68

17/50/0.67

4/77/1.77a

7/41/2.48

7th

23/27/0.22

5/13/0.17

3/28/0.16

24/09/0.68

6/44/0.61

3/12/1.75

2/18/2.39

8th

23/25/0.21

5/17/0.17

1/27/0.16a

5/115/0.56

14/63/0.59a

5/115/1.50

7/4/1.60

9th

14/63/0.20a

10/92/0.17a

23/28/0.16

6/16/0.56

12/3/0.55

6/108/1.45

21/23/1.57

10th

23/29/0.20

23/29/0.17

5/13/0.15

25/33/0.55

3/28/0.53

11/9/1.37

1/27/1.29a

  1. The GWAS applied Bayes C method and weighted single step GBLUP considering (SI) or ignoring (SII) phenotypes from non-genotyped animals, under different weights (w1, w2 and w3) for the SNPs. 1Ch = chromosome; Wi = 1 Mb window within the chromosome; pvar = proportion of variance explained by the SNPs within the window. The most common windows (ranked as top 10 in at list four analysis) are highlighted in bold.
  2. aWindow (or neighboring window) with a previous described QTL for bovine sexual precocity direct and indirect traits