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Table 3 Top 10 windows explaining the highest proportion of variance of age at first calving

From: Assessing the value of phenotypic information from non-genotyped animals for QTL mapping of complex traits in real and simulated populations

Rank Bayes C w1 w2 w3
SI SII SI SII SI SII
Ch/Wi/pvar1 Ch/Wi/pvar Ch/Wi/pvar Ch/Wi/pvar Ch/Wi/pvar Ch/Wi/pvar Ch/Wi/pvar
1st 18/5/0.40 18/5/0.23 18/5/0.23 18/5/1.13 18/5/1.17 13/71/4.59 23/27/9.66
2nd 8/107/0.34 5/16/0.19 17/50/0.21 8/107/0.84 5/115/1.16 23/27/3.26 12/3/6.43
3rd 17/50/0.29 8/107/0.19 23/25/0.20 6/108/0.80 8/107/1.08 12/3/3.24 13/71/3.42
4th 5/115/0.28 7/4/0.19 8/107/0.20 2/18/0.71 23/27/0.94 2/18/2.94 5/115/3.14
5th 7/4/0.27 17/50/0.18 7/4/0.18 22/2/0.68a 7/4/0.78 7/26/1.79 3/12/2.72
6th 3/28/0.24 23/28/0.17 23/29/0.18 7/4/0.68 17/50/0.67 4/77/1.77a 7/41/2.48
7th 23/27/0.22 5/13/0.17 3/28/0.16 24/09/0.68 6/44/0.61 3/12/1.75 2/18/2.39
8th 23/25/0.21 5/17/0.17 1/27/0.16a 5/115/0.56 14/63/0.59a 5/115/1.50 7/4/1.60
9th 14/63/0.20a 10/92/0.17a 23/28/0.16 6/16/0.56 12/3/0.55 6/108/1.45 21/23/1.57
10th 23/29/0.20 23/29/0.17 5/13/0.15 25/33/0.55 3/28/0.53 11/9/1.37 1/27/1.29a
  1. The GWAS applied Bayes C method and weighted single step GBLUP considering (SI) or ignoring (SII) phenotypes from non-genotyped animals, under different weights (w1, w2 and w3) for the SNPs. 1Ch = chromosome; Wi = 1 Mb window within the chromosome; pvar = proportion of variance explained by the SNPs within the window. The most common windows (ranked as top 10 in at list four analysis) are highlighted in bold.
  2. aWindow (or neighboring window) with a previous described QTL for bovine sexual precocity direct and indirect traits