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Table 2 The comparisons of call rates and accuracy on HapMap samples for overall SNPs

From: A new model calling procedure for Illumina BeadArray data

Criterion

Item

GenCall (%)

GenoSNP (%)

M-D (%)

All SNPs

Call rate

96.79

99.14

99.78

 

Accuracy

96.63

98.52

99.44

  1. Note: M-D: a new model calling procedure; Call rate: the percentage of valid genotypes; Accuracy: the percentage of consistent genotype between each calling method and the gold standard
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BMC Genomic Data

ISSN: 2730-6844

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