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Table 3 Credible QTLs, their locations and effects for ten agronomic traits

From: QTL underlying some agronomic traits in barley detected by SNP markers

Trait

QTLa

Chr.

LOD

R2(%)

Peak position

Nearest Marker

Intervalb

Additive

Year

MSL

qMsl2-7

2

7.24–17.32

7.27–18.70

184.71

2_598551866

179.8–187.0

–

2009,2010,2011,2013

 

qMsl7-4

7

4.07–4.71

1.93–3.07

46.01

7_542100185

44.7–49.2

+

2009,2010,2011

 

qMsl7-5

7

23.23–39.79

25.47–52.72

151.51

7_249275418

150.8–153.0

+

2009,2010,2011,2012

SMS

qSms1-1

1

3.83–7.11

1.27–2.37

29.01

M_208488_950

28.2–30.9

+

2009,2012,2013

 

qSms2-1

2

8.52–10.52

3.01–3.34

69.01

2_426554428

68.8–71.5

+

2012,2013

 

qSms2-4

2

8. 21–10.28

2.96–3.41

79.01

M_223185_603

76.3–80.8

+

2009,2013

 

qSms2-7

2

54.54–67.58

72.76–82.22

125.21

2HL_22930294

124.6–125.6

+

2009,2010,2011,2012,2013

 

qSms4-4

4

7.03–7.39

2.35–3.35

148.41

4HS_28564347

146.7–151.3

+

2009,2011

 

qSms4-5

4

4.97–5.02

1.65–2.83

154.01

4HS_9277108

151.3–156.2

+

2012,2013

SPD

qSpd2-4

2

20.37–20.63

4.38–3.99

94.41

M_230635_804

93.7–95.8

+

2009,2012

 

qSpd2-6

2

39.52–39.98

16.85–23.94

184.11

2_598509820

181.8–184.6

+

2009,2010,2011,2012,2013

 

qSpd4-1

4

30.52–30.83

1.72–2.92

145.51

4HS_32009949

140.8–153.8

+

2009,2010,2011,2012

 

qSpd7-3

7

31.09–31.17

46.97–57.06

143.81

7_379313804

143.4–145.1

–

2009,2010,2011

SP

qSp5-1

5

2.55–6.00

6.18–20.32

13.31

5_6313908

10.8–20.9

+

2011,2012,2013

SLP

qSlp2-6

2

5.62–32.59

16.70–64.20

128.71

2HL_34260490

127.8–129.6

–

2009,2011,2012,2013

 

qslp4-2

4

3.40–5.15

4.72–5.05

143.71

4_28741355

139.6–146.0

+

2010,2011

TGW

qTgw2-1

2

28.10–48.43

44.03–61.78

125.21

2HL_22930294

124.7–126.0

+

2009,2013

 

qTgw2-2

2

24.08–49.64

43.45–58.63

127.01

2HL_22930005

126.2–127.7

+

2010,2011,2012

 

qTgw5-1

5

2.69–3.32

1.39–1.56

2.91

5_54803

0–8.4

+

2011,2013

 

qTgw7-1

7

6.54–18.45

3.02–16.22

64.81

7HL_28107982

62.3–65.8

+

2010,2011,2013

 

qTgw7-3

7

5.47–10.51

3.00–10.99

181.11

7_100916612

180.0–183.3

+

2009,2011

 

qTgw7-4

7

10.50–13.16

5.42–6.64

186.21

7_74542989

185.9–187.2

+

2010,2013

GP

qGp2-2

2

5.65–33.76

11.70–57.24

128.71

2HL_34260490

128.0–129.6

+

2009,2010,2013

GS

qGs2-2

2

4.83–5.64

1.83–4.73

85.91

M_207663_1931

85.0–87.7

+

2010,2011

 

qGs2-4

2

21.68–58.64

41.14–79.50

128.71

2HL_34260490

128–130.6

+

2010,2011,2012,2013

GWP

qGwp2-1

2

3.75–5.59

6.68–11.72

133.01

2_534686550

129.6–137.4

+

2010,2011,2013

 

qGwp3-3

3

2.73–5.64

6.01–6.85

174.31

3HL_45008254

173.1–177.3

±

2010,2013

 

qGwp7-3

7

7.72–21.59

11.85–40.82

151.51

7_249275418

150.0–151.9

+

2010,2012

 

qGwp7-4

7

4.35–13.38

7.11–28.85

157.11

M_231959_191

154.9–158.7

+

2012,2013

GWS

qGws2-3

2

6.48–9.34

12.44–16.83

133.01

2_534686550

130.0–136.3

–

2011,2012,2013

 

qGws7-8

7

2.92–4.06

4.08–6.50

186.71

7_92359522

185.4–193.3

+

2012,2013

  1. aCredible QTLs which was detected more than one year
  2. b2-LOD confidence interval which was determined by finding the region on both sides of a QTL peak that corresponds to a decrease of 2 LOD score