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Table 2 Population genetic estimates of 8 Iranian and 3 outgroup cattle breeds based on autosomal chromosomes

From: Local and global patterns of admixture and population structure in Iranian native cattle

Breed N Ne [ 9 ] % SNPs MAF ≤ 0.01 Average MAF Obs. He FIS % indicine
Jersey 15 NA 14.47 0.22 0.32 −0.041 0.00001
Holstein 15 NA 8.54 0.24 0.36 −0.109 2.5
Sarabi 19 13 6.12 0.25 0.34 −0.023 42.1
Kurdi 7 29 8.52 0.26 0.36 0.005 32.3
Taleshi 7 22 15.26 0.23 0.32 0.017 61.5
Mazandarani 10 107 10.35 0.23 0.32 0.018 65.6
Najdi 7 22 15.96 0.21 0.31 −0.001 75.1
Pars 7 45 16.76 0.21 0.26 0.121 80.9
Kermani 9 23 12.01 0.20 0.27 0.083 82.6
Sistani 9 17 22.99 0.16 0.23 0.059 95.3
Brahman 15 NA 23.34 0.16 0.23 0.004 99.9
  1. N sample size, N e effective population size, MAF minor allele frequency, He heterozygosity, F IS inbreeding coefficient, %indicine refers to the Brahman breed proportion in an ADMIXTURE analysis with K = 2