Skip to main content

Table 1 SNPs information identified in this study and in a previous GWA study

From: Genetic effects of FASN, PPARGC1A, ABCG2 and IGF1 revealing the association with milk fatty acids in a Chinese Holstein cattle population based on a post genome-wide association study

CHR

RefSNP

Locus

Allele

Gene region

Positiona

Amino acid substitution

Gene

Origin

5

rs109763947

g.1407C > T

C/T

5'-UTR

66605011

 

IGF1

This study

5

rs41643203

Hapmap50366-BTA-46960

C/T

intron-2

68610818

 

Close to IGF1

[23]

6

rs109579682

g.85330C > T

C/T

Intron-9

44875251

 

PPARGC1A

This study

6

rs110131167

Hapmap26001-BTC-038813

A/G

intron-2

44926243

 

PPARGC1A

[23]

6

rs108967640

Hapmap31284-BTC-039204

C/T

-

45096462

 

PPARGC1A

[23]

6

rs137757790

g.45599A > C

A/C

Intron-7

38005668

 

ABCG2

This study

6

rs43450879

BTB-00246150

A/G

Intron-1

20993424

 

Close to ABCG2

[23]

19

rs136947640

g.7709 T > C

T/C

Exon-10

51391830

 

FASN

This study

19

rs41919999

g.8948C > T

C/T

Intron-12

51393068

 

FASN

This study

19

rs132865003

g.10568 T > C

T/C

Intron-18

51394689

 

FASN

This study

19

rs134340637

g.11280G > A

G/A

Exon-21

51395400

 

FASN

This study

19

rs41919992

g.13965C > T

C/T

Exon-27

51398083

 

FASN

This study

19

rs133498277

g.14439 T > C

T/C

Intron-28

51398557

 

FASN

This study

19

rs41919984

g.16907 T > C

T/C

Exon-37

51401022

 

FASN

This study

19

rs41919985

g.17924A > G

A/G

Exon-39

51402032

A2266T

FASN

This study

19

rs41919986

g.18663 T > C

T/C

Exon-42

51402774

 

FASN

This study

19

rs41921177

ARS-BFGL-NGS-39328

A/G

Intron-11

51326750

 

Close to FASN

[23]

  1. Note: aAll SNP nucleotide positions were derived from the Bos_taurus_UMD_3.1 assembly (GenBank accession number: AC_000171.1)