Cohort | BHS | YFS | B58C | SHIP | Raine | ALSPAC |
---|---|---|---|---|---|---|
Platform | Illumina 660 | Illumina 670 | Illumina 1.2 M | Affymetrix 6 | Illumina 660 | Illumina 550 |
Autosomal SNP probes | 573462 | 580030 | 1115905 | 909508 | 578525 | 580694 |
CNV probesa | 62092 | 63617 | 75114 | 945805 | 62138 | 0 |
Samples used in CNVR clustering | 3496 | 2682 | 2920 | 4072 | 1685 | 9382 |
No. CNVRs clustered within cohort | 1962 | 1933 | 1540 | 721 | 1929 | 491 |
Percentage of deletion/amplification/multiallelic | 43.9/34.0/22.1 | 44.0/33.9/22.1 | 46.1/34.0/19.9 | 38.6/40.7/20.7 | 44.0/34.0/22.0 | 43.6/40.5/16.0 |
No. CNVRS consistently clustered with BHS | 1962 | 393 | 855 | 224 | 838 | 11 |
Percentage of deletion/amplification/multiallelic | 43.9/34.0/22.1 | 52.7/24.7/22.6 | 51.3/27.8/20.8 | 57.6/23.2/19.2 | 52.5/28.3/19.2 | 72.7/27.3/0 |