Skip to main content

Table 1 Platform probes, samples and CNVRs clustered

From: Genome-wide association study of copy number variation with lung function identifies a novel signal of association near BANP for forced vital capacity

Cohort BHS YFS B58C SHIP Raine ALSPAC
Platform Illumina 660 Illumina 670 Illumina 1.2 M Affymetrix 6 Illumina 660 Illumina 550
Autosomal SNP probes 573462 580030 1115905 909508 578525 580694
CNV probesa 62092 63617 75114 945805 62138 0
Samples used in CNVR clustering 3496 2682 2920 4072 1685 9382
No. CNVRs clustered within cohort 1962 1933 1540 721 1929 491
Percentage of deletion/amplification/multiallelic 43.9/34.0/22.1 44.0/33.9/22.1 46.1/34.0/19.9 38.6/40.7/20.7 44.0/34.0/22.0 43.6/40.5/16.0
No. CNVRS consistently clustered with BHS 1962 393 855 224 838 11
Percentage of deletion/amplification/multiallelic 43.9/34.0/22.1 52.7/24.7/22.6 51.3/27.8/20.8 57.6/23.2/19.2 52.5/28.3/19.2 72.7/27.3/0
  1. aA CNV probe is a monomorphic probe targeted in regions of known copy number variation