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Table 1 Quality control of genotype data

From: Detection of genomic signatures of recent selection in commercial broiler chickens

Total SNPs

Quality control

SNPs used

 

NI1

MI2

UG3

MO4

LCR5

 

57,636

1,507

1,478

873

4,292

536

48,950

  1. Note: 1SNPs on GGA16, W and two linkage groups (LGE22C19W28_E50C23 and LEG64) or SNPs with unknown positions on Galgal4; 2SNPs with Mendelian inconsistency; 3Ungenotyped SNPs; 4SNPs monomorphic among all the 5 purebred lines; 5SNPs with low call rate
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BMC Genomic Data

ISSN: 2730-6844

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