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Table 1 Quality control of genotype data

From: Detection of genomic signatures of recent selection in commercial broiler chickens

Total SNPs Quality control SNPs used
  NI1 MI2 UG3 MO4 LCR5  
57,636 1,507 1,478 873 4,292 536 48,950
  1. Note: 1SNPs on GGA16, W and two linkage groups (LGE22C19W28_E50C23 and LEG64) or SNPs with unknown positions on Galgal4; 2SNPs with Mendelian inconsistency; 3Ungenotyped SNPs; 4SNPs monomorphic among all the 5 purebred lines; 5SNPs with low call rate