TY - JOUR AU - Agrama, H. AU - Eizenga, G. AU - Yan, W. PY - 2007 DA - 2007// TI - Association mapping of yield and its components in rice cultivars JO - Mol Breed VL - 19 UR - https://doi.org/10.1007/s11032-006-9066-6 DO - 10.1007/s11032-006-9066-6 ID - Agrama2007 ER - TY - JOUR AU - Anand, D. AU - Prabhu, K. V. AU - Singh, A. K. PY - 2012 DA - 2012// TI - Analysis of molecular diversity and fingerprinting of commercially grown Indian rice hybrids JO - J. Plant Biochem Biotechnol. VL - 21 UR - https://doi.org/10.1007/s13562-011-0089-7 DO - 10.1007/s13562-011-0089-7 ID - Anand2012 ER - TY - JOUR AU - Babu, B. K. AU - Meena, V. AU - Agarwal, V. AU - Agrawal, P. K. PY - 2014 DA - 2014// TI - Population structure and genetic diversity analysis of Indian and exotic rice (Oryza sativa L.) accessions using SSR markers JO - Mol Biol Rep VL - 41 UR - https://doi.org/10.1007/s11033-014-3304-5 DO - 10.1007/s11033-014-3304-5 ID - Babu2014 ER - TY - JOUR AU - Chakhonkaen, S. AU - Pitnjam, K. AU - Saisuk, W. AU - Ukoskit, K. AU - Muangprom, A. PY - 2012 DA - 2012// TI - Genetic structure of Thai rice and rice accessions obtained from the international rice research institute JO - Rice VL - 5 UR - https://doi.org/10.1186/1939-8433-5-19 DO - 10.1186/1939-8433-5-19 ID - Chakhonkaen2012 ER - TY - JOUR AU - Choudhury, D. R. AU - Singh, N. AU - Singh, A. K. AU - Kumar, S. AU - Srinivasan, K. AU - Tyagi, R. K. PY - 2014 DA - 2014// TI - Analysis of genetic diversity and population structure of rice germplasm from North-eastern region of India and development of a core germplasm set JO - PLoS One VL - 9 UR - https://doi.org/10.1371/journal.pone.0113094 DO - 10.1371/journal.pone.0113094 ID - Choudhury2014 ER - TY - JOUR AU - Choudhary, G. AU - Ranjitkumar, N. AU - Surapaneni, M. AU - Deborah, D. A. AU - Vipparla, A. AU - Anuradha, G. PY - 2013 DA - 2013// TI - Molecular genetic diversity of major Indian rice cultivars over decadal period JO - PLoS One VL - 8 UR - https://doi.org/10.1371/journal.pone.0066197 DO - 10.1371/journal.pone.0066197 ID - Choudhary2013 ER - TY - JOUR AU - Choudhury, B. AU - Khan, M. L. AU - Dayanandan, S. PY - 2013 DA - 2013// TI - Genetic structure and diversity of indegenous rice (Oryza sativa) varieties in the Eastern Himalyan region of Northeast India JO - Springer Plus VL - 2 UR - https://doi.org/10.1186/2193-1801-2-228 DO - 10.1186/2193-1801-2-228 ID - Choudhury2013 ER - TY - JOUR AU - Christiansen, M. J. AU - Andersen, S. B. AU - Ortiz, R. PY - 2002 DA - 2002// TI - Diversity changes in an intensively bred wheat germplasm during the 20th century JO - Mol Breed VL - 9 UR - https://doi.org/10.1023/A:1019234323372 DO - 10.1023/A:1019234323372 ID - Christiansen2002 ER - TY - JOUR AU - Das, B. AU - Sengupta, S. AU - Parida, S. K. AU - Roy, B. AU - Ghosh, M. AU - Prasad, M. PY - 2013 DA - 2013// TI - Genetic diversity and population structure of rice landraces from Eastern and North Eastern States of India JO - BMC Genet VL - 14 UR - https://doi.org/10.1186/1471-2156-14-71 DO - 10.1186/1471-2156-14-71 ID - Das2013 ER - TY - CHAP AU - Dudley, J. W. ED - Frey, K. J. PY - 1994 DA - 1994// TI - Plant breeding- a vital part of improvement in crop yields, quality and production efficiency BT - Historical perspectives in plant sciences PB - Iowa State University Press CY - Ames ID - Dudley1994 ER - TY - JOUR AU - Evano, G. AU - Regnuat, S. AU - Goudet, J. PY - 2005 DA - 2005// TI - Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study JO - Mol Ecol. VL - 14 UR - https://doi.org/10.1111/j.1365-294X.2005.02553.x DO - 10.1111/j.1365-294X.2005.02553.x ID - Evano2005 ER - TY - JOUR AU - Fu, Y. -. B. AU - Peterson, G. W. AU - Yu, J. -. K. AU - Gao, L. AU - Jia, J. AU - Richards, K. W. PY - 2006 DA - 2006// TI - Impact of plant breeding on genetic diversity of the Canadian hard red spring wheat germplasm as revealed by EST-derived SSR markers JO - Theor Appl Genet VL - 112 UR - https://doi.org/10.1007/s00122-006-0225-2 DO - 10.1007/s00122-006-0225-2 ID - Fu2006 ER - TY - JOUR AU - Garris, A. J. AU - Tai, T. H. AU - Coburn, J. AU - Kresovich, S. AU - McCouch, S. PY - 2005 DA - 2005// TI - Genetic structure and diversity in Oryza sativa L JO - Genetics VL - 169 UR - https://doi.org/10.1534/genetics.104.035642 DO - 10.1534/genetics.104.035642 ID - Garris2005 ER - TY - JOUR AU - Heal, G. AU - Walker, B. AU - Levin, S. AU - Arrow, K. AU - Dasgupta, P. AU - Dailyd, G. PY - 2004 DA - 2004// TI - Genetic diversity and interdependent crop choices in agriculture JO - Resour Energy Econ. VL - 26 UR - https://doi.org/10.1016/j.reseneeco.2003.11.006 DO - 10.1016/j.reseneeco.2003.11.006 ID - Heal2004 ER - TY - JOUR AU - Huang, X. -. Q. AU - Wolf, M. AU - Ganal, M. W. AU - Orford, S. AU - Koebner, R. M. D. AU - Roder, M. S. PY - 2007 DA - 2007// TI - Did modern plant breeding lead to genetic erosion in European winter wheat varieties? JO - Crop Sci. VL - 47 UR - https://doi.org/10.2135/cropsci2006.04.0261 DO - 10.2135/cropsci2006.04.0261 ID - Huang2007 ER - TY - JOUR AU - Hysing, S. -. C. AU - Sa¨lla, T. AU - Nybom, H. AU - Liljeroth, E. AU - Merker, A. AU - Orforda, S. PY - 2008 DA - 2008// TI - Temporal diversity changes among 198 Nordic bread wheat landraces and cultivars detected by retrotransposon-based S-SAP analysis JO - Plant Genet Resour VL - 6 UR - https://doi.org/10.1017/S1479262108983544 DO - 10.1017/S1479262108983544 ID - Hysing2008 ER - TY - JOUR AU - Jin, L. AU - Lu, Y. AU - Xiao, P. AU - Sun, M. AU - Corke, H. AU - Bao, J. PY - 2010 DA - 2010// TI - Genetic diversity and population structure of a diverse set of rice germplasm for association mapping JO - Theor Appl Genet VL - 121 UR - https://doi.org/10.1007/s00122-010-1324-7 DO - 10.1007/s00122-010-1324-7 ID - Jin2010 ER - TY - JOUR AU - Kibria, K. AU - Nur, F. AU - Begum, S. N. AU - Islam, M. M. AU - Paul, S. K. AU - Rahman, K. S. PY - 2009 DA - 2009// TI - Molecular marker based genetic diversity analysis in aromatic rice genotypes using SSR and RAPD markers JO - Int J Sustain Crop Prod VL - 4 ID - Kibria2009 ER - TY - JOUR AU - Li, F. P. AU - Lee, Y. S. AU - Kwon, S. W. AU - Li, G. AU - Park, Y. J. PY - 2014 DA - 2014// TI - Analysis of genetic diversity and trait correlations among Korean landrace rice (Oryza sativa L.) JO - Genet Mol Res VL - 13 UR - https://doi.org/10.4238/2014.April.14.12 DO - 10.4238/2014.April.14.12 ID - Li2014 ER - TY - JOUR AU - Liakat Ali, M. AU - McClung, A. M. AU - Jia, M. H. AU - Kimball, J. A. AU - McCouch, S. R. AU - Georgia, C. E. PY - 2011 DA - 2011// TI - A rice diversity panel evaluated for genetic and agro-morphological diversity between subpopulations and its geographic distribution JO - Crop Sci VL - 51 UR - https://doi.org/10.2135/cropsci2010.11.0641 DO - 10.2135/cropsci2010.11.0641 ID - Liakat Ali2011 ER - TY - JOUR AU - Liu, K. AU - Muse, S. V. PY - 2005 DA - 2005// TI - Power Marker: an integrated analysis environment for genetic marker analysis JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bti282 DO - 10.1093/bioinformatics/bti282 ID - Liu2005 ER - TY - JOUR AU - Liu, W. AU - Shahid, M. Q. AU - Bai, L. AU - Lu, Z. AU - Chen, Y. AU - Jiang, L. PY - 2015 DA - 2015// TI - Evaluation of genetic diversity and development of a core collection of wild rice (Oryza rufipogon Griff.) Populations in China JO - PLoS One VL - 10 UR - https://doi.org/10.1371/journal.pone.0145990 DO - 10.1371/journal.pone.0145990 ID - Liu2015 ER - TY - JOUR AU - Mantegazza, R. AU - Biloni, M. AU - Grassi, F. AU - Basso, B. AU - Lu, B. -. R. AU - Cai, X. X. PY - 2008 DA - 2008// TI - Temporal trends of variation in Italian rice germplasm over the past two centuries revealed by AFLP and SSR Markers JO - Crop Sci. VL - 48 UR - https://doi.org/10.2135/cropsci2007.09.0532 DO - 10.2135/cropsci2007.09.0532 ID - Mantegazza2008 ER - TY - JOUR AU - McCouch, S. R. AU - Chen, X. AU - Panaud, O. AU - Temnykh, S. AU - Xu, Y. AU - Cho, Y. G. PY - 1997 DA - 1997// TI - Microsatellite marker development, mapping and applications in rice genetics and breeding JO - Plant Mol Biol VL - 35 UR - https://doi.org/10.1023/A:1005711431474 DO - 10.1023/A:1005711431474 ID - McCouch1997 ER - TY - JOUR AU - Nachimuthu, V. V. AU - Muthurajan, R. AU - Duraialaguraja, S. AU - Sivakami, R. AU - Pandian, B. A. AU - Ponniah, G. PY - 2015 DA - 2015// TI - Analysis of population structure and genetic diversity in rice germplasm using SSR Markers: An initiative towards association mapping of agronomic traits in Oryza sativa JO - Rice. VL - 8 UR - https://doi.org/10.1186/s12284-015-0062-5 DO - 10.1186/s12284-015-0062-5 ID - Nachimuthu2015 ER - TY - JOUR AU - Neeraja, C. N. AU - Vemireddy, L. R. AU - Malathi, S. AU - Siddiq, E. A. PY - 2009 DA - 2009// TI - Identification of alternate dwarfing gene sources to widely used Dee-Gee-Woo-Gen allele of sd1 gene by molecular and biochemical assays in rice (Oryza sativa L.) JO - Electronic J Biotechn VL - 12 ID - Neeraja2009 ER - TY - STD TI - Oliveros JC. Venny. An interactive tool for comparing lists with Venn’s diagrams. 2007–2015. http://bioinfogp.cnb.csic.es/tools/venny/index.html. Accessed 1 Feb 2016. UR - http://bioinfogp.cnb.csic.es/tools/venny/index.html ID - ref27 ER - TY - JOUR AU - Ostrowski, M. F. AU - David, J. AU - Santoni, S. AU - McKhann, H. AU - Reboud, X. AU - Corre, V. L. PY - 2006 DA - 2006// TI - Evidence for a large-scale population structure among accessions of Arabidopsis thaliana: possible causes and consequences for the distribution of linkage disequilibrium JO - Mol Ecol VL - 15 UR - https://doi.org/10.1111/j.1365-294X.2006.02865.x DO - 10.1111/j.1365-294X.2006.02865.x ID - Ostrowski2006 ER - TY - JOUR AU - Pachauri, V. AU - Taneja, N. AU - Vikram, P. AU - Singh, N. K. AU - Singh, S. PY - 2013 DA - 2013// TI - Molecular and morphological characterisation of Indian farmers rice varieties (Oryza sativa L.) JO - AJCS VL - 7 ID - Pachauri2013 ER - TY - STD TI - Pal S, Jain S, Saini N, Aarti, Jain RK. Identification of microsatellite markers for differentiating some Basmati and non- Basmati varieties. IJBT. 2004;3(4):519–26. ID - ref30 ER - TY - JOUR AU - Peakall, R. AU - Smouse, P. PY - 2012 DA - 2012// TI - GenAlEx 6.5: Genetic analysis in Excel. Population genetic software for teaching and research - an update JO - Bioinformatics VL - 28 UR - https://doi.org/10.1093/bioinformatics/bts460 DO - 10.1093/bioinformatics/bts460 ID - Peakall2012 ER - TY - STD TI - Perrier X, Jacquemoud-Collet JP. DARwin software. 2006. http://darwin.cirad.fr/. Accessed 30 Sept 2015. UR - http://darwin.cirad.fr/ ID - ref32 ER - TY - STD TI - Plucknett DL, Smith NJH, Williams JT, Anishetty NM. Gene banks and the world’s food. Princeton, New Jersey: Princeton University Press; 1987. p. 247 ID - ref33 ER - TY - JOUR AU - Pritchard, J. K. AU - Stephens, M. AU - Donnelly, P. PY - 2000 DA - 2000// TI - Inference of population structure using multilocus genotype data JO - Genetics VL - 155 ID - Pritchard2000 ER - TY - JOUR AU - Roussel, V. AU - Koenig, J. AU - Beckert, M. AU - Balfourier, F. PY - 2004 DA - 2004// TI - Molecular diversity in French bread wheat accessions related to temporal trends and breeding programmes JO - Theor Appl Genet VL - 108 UR - https://doi.org/10.1007/s00122-003-1502-y DO - 10.1007/s00122-003-1502-y ID - Roussel2004 ER - TY - JOUR AU - Roy, S. AU - Banerjee, A. AU - Mawkhlieng, B. AU - Misra, A. K. AU - Pattanayak, A. AU - Harish, G. D. PY - 2015 DA - 2015// TI - Genetic diversity and population structure in aromatic and quality rice (Oryza sativa L.) landraces from North-Eastern India JO - PloS One VL - 10 UR - https://doi.org/10.1371/journal.pone.0129607 DO - 10.1371/journal.pone.0129607 ID - Roy2015 ER - TY - JOUR AU - Salgotra, R. K. AU - Gupta, B. B. AU - Bhat, J. A. AU - Sharma, S. PY - 2015 DA - 2015// TI - Genetic diversity and population structure of Basmati rice (Oryza sativa L.) germplasm collected from North Western Himalayas using trait linked SSR markers JO - PLoS One VL - 10 UR - https://doi.org/10.1371/journal.pone.0131858 DO - 10.1371/journal.pone.0131858 ID - Salgotra2015 ER - TY - JOUR AU - Shah, S. M. AU - Naveed, S. A. AU - Arif, M. PY - 2013 DA - 2013// TI - Genetic diversity in Basmati and non- Basmati rice varieties based on microsatellite markers JO - Pak J Bot. VL - 45 ID - Shah2013 ER - TY - BOOK AU - Shobha Rani, N. AU - Srikanth, S. AU - Bhadana, V. P. AU - Jyothi, B. AU - Sundaram, R. M. AU - Senguttuvel, P. AU - Prasad, G. S. V. AU - Trushar, S. AU - Prasad, P. V. N. S. AU - Hari Prasad, A. S. AU - Subba Rao, L. V. AU - Agarawal, S. K. AU - Viraktamath, B. C. PY - 2014 DA - 2014// TI - Genetic diversity and genealogy of rice varieties of India PB - Directorate of Rice research (ICAR) CY - Hyderabad ID - Shobha Rani2014 ER - TY - JOUR AU - Singh, H. AU - Deshmukh, R. K. AU - Singh, A. AU - Singh, A. K. AU - Gaikwad, K. AU - Sharma, T. R. PY - 2010 DA - 2010// TI - Highly variable SSR markers suitable for rice genotyping using agarose gels JO - Mol Breed VL - 25 UR - https://doi.org/10.1007/s11032-009-9328-1 DO - 10.1007/s11032-009-9328-1 ID - Singh2010 ER - TY - JOUR AU - Singh, K. N. AU - Nandi, R. AU - Shanmugasundram, P. AU - Sadasivam, S. AU - Huang, N. AU - Brar, D. S. PY - 1999 DA - 1999// TI - High-resolution DNA fingerprinting of Indian rice (Oryza sativa L) varieties by amplified fragment length polymorphism JO - Genet Resour Crop Evol VL - 46 UR - https://doi.org/10.1023/A:1008696306235 DO - 10.1023/A:1008696306235 ID - Singh1999 ER - TY - JOUR AU - Sivaranjani, A. K. P. AU - Pandey, M. K. AU - Sudharshan, I. AU - Kumar, G. R. AU - Madhav, M. S. AU - Sundaram, R. M. PY - 2010 DA - 2010// TI - Assessment of genetic diversity among Basmati and non-Basmati aromatic rices of India using SSR markers JO - Current Sci VL - 99 ID - Sivaranjani2010 ER - TY - JOUR AU - Steele, K. A. AU - Gyawali, S. AU - Joshi, K. D. AU - Shrestha, P. AU - Sthapit, B. R. AU - Witcombe, J. R. PY - 2009 DA - 2009// TI - Has the introduction of modern rice varieties changed rice genetic diversity in a high altitude region of Nepal? JO - Field Crops Res VL - 113 UR - https://doi.org/10.1016/j.fcr.2009.04.002 DO - 10.1016/j.fcr.2009.04.002 ID - Steele2009 ER - TY - JOUR AU - Sow, M. AU - Ndjiondjop, M. -. N. AU - Sido, A. AU - Mariac, C. AU - Laing, M. AU - Bezançon, G. PY - 2014 DA - 2014// TI - Genetic diversity, population structure and differentiation of rice species from Niger and their potential for rice genetic resources conservation and enhancement JO - Genet Resour Crop Evol VL - 61 UR - https://doi.org/10.1007/s10722-013-0026-9 DO - 10.1007/s10722-013-0026-9 ID - Sow2014 ER - TY - JOUR AU - Upadhyay, P. AU - Singh, V. K. AU - Neeraja, C. N. PY - 2011 DA - 2011// TI - Identification of genotype specific alleles and molecular diversity assessment of popular rice (Oryza sativa L.) varieties of India JO - Int J Plant Breed Genet VL - 5 UR - https://doi.org/10.3923/ijpbg.2011.130.140 DO - 10.3923/ijpbg.2011.130.140 ID - Upadhyay2011 ER - TY - JOUR AU - Upadhyay, P. AU - Neeraja, C. N. AU - Kole, C. AU - Singh, V. K. PY - 2012 DA - 2012// TI - Population structure and genetic diversity in popular rice varieties of India as evidenced from SSR analysis JO - Biochem Genet VL - 50 UR - https://doi.org/10.1007/s10528-012-9519-z DO - 10.1007/s10528-012-9519-z ID - Upadhyay2012 ER - TY - JOUR AU - Wei, X. AU - Yuan, X. AU - Yu, H. AU - Wang, Y. AU - Xu, Q. AU - Tang, S. PY - 2009 DA - 2009// TI - Temporal changes in SSR allelic diversity of major rice cultivars in China JO - J Genet Genomics VL - 36 UR - https://doi.org/10.1016/S1673-8527(08)60125-3 DO - 10.1016/S1673-8527(08)60125-3 ID - Wei2009 ER - TY - JOUR AU - White, J. AU - Law, J. R. AU - MacKay, I. AU - Chalmers, K. J. AU - Smith, J. S. AU - Kilian, A. PY - 2007 DA - 2007// TI - The genetic diversity of UK, US and Australian cultivars of Triticum aestivum measured by DArT markers and considered by genome JO - Theor Appl Genet VL - 116 UR - https://doi.org/10.1007/s00122-007-0681-3 DO - 10.1007/s00122-007-0681-3 ID - White2007 ER - TY - JOUR AU - Zhang, D. AU - Zhang, H. AU - Wang, M. AU - Sun, J. AU - Qi, Y. AU - Wang, F. PY - 2009 DA - 2009// TI - Genetic structure and differentiation of Oryza sativa L. in China revealed by microsatellites JO - Theor Appl Genet VL - 119 UR - https://doi.org/10.1007/s00122-009-1112-4 DO - 10.1007/s00122-009-1112-4 ID - Zhang2009 ER - TY - JOUR AU - Zhang, D. AU - Zhang, H. AU - Wei, X. AU - Qi, Y. AU - Wang, M. AU - Sun, J. PY - 2007 DA - 2007// TI - Genetic structure and diversity of Oryza sativa L. in Guizhou, China JO - Chinese Sci Bull VL - 52 UR - https://doi.org/10.1007/s11434-007-0063-x DO - 10.1007/s11434-007-0063-x ID - Zhang2007 ER - TY - JOUR AU - Zhang, P. AU - Li, J. AU - Li, X. AU - Liu, X. AU - Zhao, X. AU - Lu, Y. PY - 2011 DA - 2011// TI - Population structure and genetic diversity in a rice core collection (Oryza sativa L.) investigated with SSR markers JO - PLoS One VL - 6 UR - https://doi.org/10.1371/journal.pone.0027565 DO - 10.1371/journal.pone.0027565 ID - Zhang2011 ER -