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Table 2 Up-regulated and down-regulated genes in centromere-46.75 Mb (R2 and R3 regions) of chromosome 12 in the epididymal fat in the A/J-12SM consomic strain

From: Genetic dissection of the fatty liver QTL Fl1sa by using congenic mice and identification of candidate genes in the liver and epididymal fat

Symbol

Gene name

Position (Mbp)

Region

Fold changea

Gene bank ID

Pfn4

profilin family, member 4

4.76

R2

0.525

NM_028376

Fkbp1b

FK506 binding protein 1b

4.83

R2

0.557

NM_016863

Apob

apolipoprotein B

7.97

R2

7.460

NM_009693

Nt5c1b

5’-nucleotidase, cytosolic IB

10.36

R2

0.296

NM_027588

Ntsr2

neurotensin receptor 2

16.65

R2

1.896

NM_008747

Zfp125

zinc finger protein 125

20.89

R2

0.104

AJ005350

Rsad2

radical S-adenosyl methionine domain containing 2

26.44

R2

0.580

NM_021384

Cmpk2

cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial

26.46

R2

0.463

NM_020557

Allc

allantoicase

28.55

R2

0.366

NM_053156

Sh3yl1

Sh3 domain YSC-like 1

30.91

R3

0.565

NM_013709

Slc26a3

solute carrier family 26, member 3

31.39

R3

0.361

ENSMUST

00000001254

Gdap10

ganglioside-induced differentiation-associated-protein 10

32.82

R3

1.928

BC052902

Cdhr3

cadherin-related family member 3

33.03

R3

0.557

NM_001024478

Efcab10

EF-hand calcium binding domain 10

33.39

R3

0.578

NM_029152

Mir680-3

microRNA 680-3

35.19

R3

2.545

NR_030449

Dgkb

diacylglycerol kinase, beta

37.88

R3

1.879

NM_178681

Nrcam

neuronal cell adhesion molecule

44.32

R3

0.529

NM_176930

Stxbp6

syntaxin binding protein 6 (amisyn)

44.85

R3

3.307

NM_144552

Nova1

neuro-oncological ventral antigen 1

46.69

R3

1.908

NM_021361

  1. Up-regulated (log20.75, >1.68-fold) and down-regulated (log2-0.75, <0.60-fold) genes were identified from a DNA microarray analysis between A/J and A/J-12SM mice
  2. aFold change was calculated by the gene expression level in A/J-12SM relative to that in A/J mice