Table 3 Characterization of three networks formed by associations between genes/proteins from the compendium
Network/Association type | Number of nodes (genes/proteins)/Number of genes as a percentage of all genes from the compendium | Number of edges | Average number of neighbors | Genes with the highest numbers of neighbors |
|---|---|---|---|---|
Experimental | 355 (62%) | 1254 | 4.3 | ESR1, SIRT1, AR, NFKB1, STAT3, MAPK3, HDAC3, UBB, PTPN11 |
Knowledge | 304 (53%) | 2403 | 15.9 | AGT, KNG1, MCHR1, PMCH, NMUR2, NMUR1, NMS, NMU, MCHR2, POMC |
Homology | 142 (25%) | 522 | 7.4 | NMUR2, NMUR1, MCHR1, MCHR2, OPRD1, NPY1R |
All three types | The total number of genes involved in all three networks = 408 (71%) | |||