From: Genetic diversity, extent of linkage disequilibrium and persistence of gametic phase in Canadian pigs
Breed
Excluded SNPs
Remaining SNPsb
MAF < 0.05
SNP CR < 0.90
HWE p-value < 0.00001
Duroc
16,815
2,849
4,503
34,927
Landrace
10,136
1,251
42,164
Yorkshire
10,260
2,837
1,905
42,121
Crossbreda
10,934
2,593
1,756
42,325