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Table 1 Significantly changed pathways in each of the three primary lymphoid tissues in different contrasts

From: Deciphering alternative splicing and nonsense-mediated decay modulate expression in primary lymphoid tissues of birds infected with avian pathogenic E. coli (APEC)

Contrast

Pathway

Adjusted p value

Bone Marrow

Thymus

Bursa

Susceptible vs. Non-challenged birds at 5 dpi

↑ gga 04145: Phagosome

1.34E-03

NA

NA

↑ gga 04142: Lysosome

1.31E-02

NA

NA

↓ gga 04110: Cell cycle

NA

6.98E-05

NA

↓ gga 04115: p53 signaling pathway

NA

2.37E-02

NA

↑ gga 04514: Cell adhesion molecules (CAMs)

NA

NA

5.48E-03

Susceptible vs. Resistant birds at 5 dpi

↑ gga 04145: Phagosome

2.29E-02

3.12E-02

NA

↑ gga 04142: Lysosome

7.86E-03

1.18E-03

NA

↑ gga 04060: Cytokine-cytokine receptor interaction

NA

2.58E-02

NA

↑ gga 04210: Apoptosis

NA

2.14E-02

NA

↓ gga 04110: Cell cycle

NA

7.30E-03

NA

↑ gga 04514: Cell adhesion molecules (CAMs)

NA

3.26E-03

NA

  1. NA none available, ↑ the significantly changed pathway was induced, ↓ the significantly changed pathway was suppressed