Table 1 Simulation for SNP data: mean(sd) of true positives (TP) and false positives (FP) based on 100 replicates. Upper panel: (n, p) = (500, 750); Lower panel: (n, p) = (1000, 1500)
A1 | A2 | A3 | A4 | ||
|---|---|---|---|---|---|
AR ρ = 0.1 | TP FP | 41.04(7.07) 37.02(28.65) | 39.28(7.40) 32.02(27.49) | 61.14(2.86) 169.38(18.79) | 53.30(4.23) 83.58(21.61) |
AR ρ = 0.5 | TP FP | 64.86(6.89) 32.12(30.54) | 41.46(8.62) 21.84(24.23) | 64.66(2.89) 136.22(11.93) | 57.22(3.96) 60.10(11.60) |
AR ρ = 0.9 | TP FP | 74.98(0.14) 9.74(13.31) | 31.22(4.57) 4.30(3.90) | 64.18(2.68) 88.84(12.52) | 51.98(3.11) 30.52(9.67) |
Block ρ = 0.1 | TP FP | 47.70(8.62) 61.40(77.21) | 45.82(8.92) 52.22(71.40) | 62.70(2.75) 162.66(18.66) | 55.70(4.20) 79.52(19.80) |
Block ρ = 0.5 | TP FP | 67.92(6.35) 31.40(22.18) | 39.62(7.05) 15.74(13.65) | 65.30(3.23) 116.16(13.10) | 57.00(3.68) 43.96(13.36) |
Block ρ = 0.9 | TP FP | 72.06(4.16) 12.22(16.30) | 30.28(6.08) 5.08(6.22) | 64.08(2.29) 83.30(12.76) | 50.94(3.44) 27.86(10.81) |
AR ρ = 0.1 | TP FP | 94.20(12.15) 77.10(50.90) | 94.16(12.28) 77.62(51.35) | 126.22(4.55) 317.70(22.91) | 113.78(6.27) 165.26(31.10) |
AR ρ = 0.5 | TP FP | 142.68(3.61) 28.12(25.50) | 84.28(10.71) 30.82(26.16) | 130.12(3.79) 233.08(16.09) | 116.66(4.48) 103.42(20.82) |
AR ρ = 0.9 | TP FP | 149.96(0.20) 33.86(33.25) | 64.40(9.54) 9.26(9.25) | 124.06(3.05) 105.46(17.51) | 98.96(4.46) 25.74(9.43) |
Block ρ = 0.1 | TP FP | 101.22(12.37) 72.18(45.32) | 98.96(13.55) 67.76(46.36) | 132.46(3.82) 274.58(18.19) | 121.84(4.57) 129.70(19.58) |
Block ρ = 0.5 | TP FP | 145.68(5.93) 62.78(58.00) | 75.84(9.18) 16.22(13.47) | 129.94(3.13) 144.26(17.69) | 114.92(4.25) 45.00(12.74) |
Block ρ = 0.9 | TP FP | 147.40(8.42) 27.56(30.66) | 56.32(9.93) 6.36(7.59) | 120.78(4.10) 81.14(13.58) | 92.62(6.34) 19.60(9.02) |