Table 2 Number and proportion of genome covered (Coverage %) by Gain, Loss and Complex Copy Number Variants Regions per chromosome (CHR)
From: Genomic variability in Mexican chicken population using copy number variants
CHR | Gain (a) | Loss (a) | Complex (a) | Total | Coverage (%) |
|---|---|---|---|---|---|
1 | 186 (3.94) | 46 (0.38) | 6 (0.29) | 238 | 4.61 |
2 | 140 (4.78) | 31 (0.38) | 2 (0.14) | 173 | 5.29 |
3 | 101 (3.02) | 18 (0.11) | 0 (0) | 119 | 3.13 |
4 | 58 (3.40) | 20 (0.36) | 0 (0) | 78 | 3.75 |
5 | 58 (6.43) | 8 (0.15) | 0 (0) | 66 | 6.58 |
6 | 41 (3.61) | 9 (0.15) | 1 (0.15) | 51 | 3.91 |
7 | 36 (4.03) | 2 (0.02) | 1 (0.46) | 39 | 4.51 |
8 | 32 (4.55) | 1 (0.30) | 1 (0.68) | 34 | 5.53 |
9 | 25 (3.22) | 8 (0.23) | 0 (0) | 33 | 3.45 |
10 | 32 (5.06) | 9 (0.79) | 2 (1.11) | 43 | 6.96 |
11 | 17 (2.64) | 7 (0.78) | 1 (0.19) | 25 | 3.61 |
12 | 26 (2.73) | 4 (0.16) | 0 (0) | 30 | 2.89 |
13 | 30 (3.88) | 8 (1.05) | 1 (0.52) | 39 | 5.45 |
14 | 32 (7.72) | 7 (2.05) | 1 (0.20) | 40 | 9.97 |
15 | 18 (1.90) | 3 (0.12) | 1 (0.31) | 22 | 2.33 |
16 | 0 (0) | 0 (0) | 1 (81.60) | 1 | 81.60 |
17 | 8 (2.28) | 5 (0.97) | 0 (0) | 13 | 3.26 |
18 | 12 (3.54) | 7 (2.06) | 2 (5.03) | 21 | 10.63 |
19 | 22 (8.32) | 4 (0.23) | 1 (0.91) | 27 | 9.46 |
20 | 17 (3.57) | 3 (0.26) | 2 (0.39) | 22 | 4.22 |
21 | 9 (1.60) | 5 (0.30) | 0 (0) | 14 | 1.90 |
22 | 8 (4.31) | 2 (0.74) | 1 (0.62) | 11 | 5.67 |
23 | 9 (4.78) | 5 (0.95) | 1 (0.73) | 15 | 6.46 |
24 | 12 (9.91) | 2 (0.24) | 0 (0) | 14 | 10.14 |
25 | 3 (2.41) | 3 (1.13) | 2 (2.39) | 8 | 6.48 |
26 | 6 (2.27) | 5 (2.11) | 1 (1.46) | 12 | 5.84 |
27 | 11 (6.04) | 4 (3.66) | 1 (10.74) | 16 | 20.45 |
28 | 10 (3.36) | 0 (0) | 2 (2.24) | 12 | 5.61 |
Total | 959 | 226 | 31 | 1216 |