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Table 2 Mean heterozygosity, average inbreeding per breed, average genomic relatedness between animals between and within breed estimated from a genomic relationship matrix and minor allele frequencies

From: Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps

Item

 

Breed group

 

Rom

Coop

Peren

Tex

CompRCP

CompRCPT

Comprcp2

Relationship coefficient between animals

Rom

0.000

      

Coop

0.000

0.011

     

Peren

0.000

0.000

−0.001

    

Tex

0.000

0.000

0.000

0.008

   

CompRCP

0.000

0.009

0.000

0.001

0.015

  

CompRCPT

0.000

0.007

0.000

0.003

0.011

0.018

 

Comprcp2

0.001

0.003

0.000

0.002

0.007

0.006

0.063

Inbreeding

_

0.030

0.020

0.002

0.007

0.010

−0.007

0.092

Heterozygosity

_

0.358

0.351

0.376

0.354

0.381

0.377

0.370

MAF in % of SNP per categories

MAF ≤ 0.01

1.9

1.8

1.3

1.9

0.9

1.1

0.6

0.01 < MAF ≤ 0.05

5.2

4.7

4.1

5.8

3.7

3.6

2.5

0.05 < MAF ≤ 0.1

7.1

7.1

6.3

7.6

6.0

6.1

5.4

0.1 < MAF ≤ 0.2

17.5

17.4

17.3

17.6

17.0

16.8

16.7

0.2 < MAF ≤ 0.3

20.9

20.9

21.6

20.7

21.5

22.0

22.1

0.3 < MAF ≤ 0.4

22.9

23.4

23.9

22.8

24.7

24.4

25.7

0.4 < MAF ≤ 0.5

24.6

24.7

25.5

23.5

26.3

26.0

26.9