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Table 1 List of primer-pairs developed and used to amplify the SSR loci in this study

From: Genetic structure and relationships within and between cultivated and wild korarima [Aframomum corrorima (Braun) P.C.M. Jansen] in Ethiopia as revealed by simple sequence repeat (SSR) markers

Locus

SSAN

Primer sequence (5′-3′)

Repeat motifs

Expected size

Observed repeat

Motifs

Allele size rangea

Afco_2

JX422069.1

F

TTGACTTGGGTATGGCAAAA

(AG)13

230

-

212–242

R

AAGGTCGAGCAGGAGTAGCA

Afco_3

JX422068.1

F

GAATTCATGTTCTTGAGAAAAGTTTG

(AG)7

198

(GA)2

191–200

R

GCCAAATGAACGGACAGATT

Afco_5

JX422066.1

F

TGACTCCAAACTTGCAGGAG

(CT)8

160

(CT)12

160–171

R

AGCAGATCAATGCACGTGAG

Afco_6

JX422065.1

F

TCGACATGAAATCCCTACGAGA

(AG)15

243

(AG)12

230–253

R

GAGCTGTGAAGTGAAAGGGC

Afco_8

JX422063.1

F

GCTAACTTGTCTTTCCTATTTCTCC

(CT)13

239

*

229–245

R

TGGAAGCTGCATTCACTGAG

Afco_11

JX422060.1

F

AATGCTTCTAGCTGGTTCGAC

(GT)7

241

(GT)6

240–260

R

CCTTGAATTTTATATTTCTTCCAGATG

Afco_14

JX422057.1

F

CCTTCCACGGTGTCTCATTT

(GA)19

281

(GA)10

280–285

R

TCATCCAAAACTTCAATCATGG

Afco_15

JX422056.1

F

ATCGATGGGATCGCCTTAC

(GA)19

292

(GA)9

256–262

R

GACGTCACGAATGTTGGTTG

Afco_19

JX422052.1

F

CAGACGAGAGGAGGGAGATG

(GA)17

373

(GA)9

356–364

R

CTCTGTGAGCCGTTCAATCC

Afco_21

JX422050.1

F

CGACAAGGAGGAGAAGAGGT

(GA)14

250

(GA)6 GAAAGG (GA)7

250–260

R

CCAACAGCCCTTCTTTTTGA

Afco_22

JX422049.1

F

GAAGAAGCGTTGGTGAGAGG

(TC)20

468

(TC)9

449–455

R

CTGTGTCGTCCAGCCGTATT

  1. a= refers to allele size across all individuals included in the study; SSAN source sequence accession number; *= The SSR are located in the trimmed (low quality) part of the sequence and hence the length of the repeat motif could not be determined; − = sequencing failed