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Table 1 Simulation results of local ancestry

From: LAIT: a local ancestry inference toolkit

Ways admixed

Criteria

LAMP

LAMP-LD

ELAI

HAPMIX

Two-way

Mean Squared Error

.399

.156

.144

.004

Alleles Correct (%)

83.1

92.2

93.6

99.8

Runtime (minutes)

.497

8.86

10.6

42.9

Max Memory Usage (GB)

.103

.217

.090

1.01

Three-way

Mean Squared Error

1.08

.305

.503

-- a

Alleles Correct (%)

62.9

84.9

82.7

-- a

Runtime (minutes)

.414

14.7

25.4

-- a

Max Memory Usage (GB)

2.69

.287

.137

-- a

  1. aHAPMIX can only do 2-way inference