Fig. 1
From: Fine mapping of a QTL affecting levels of skatole on pig chromosome 7
Region plot of the single marker associations between SSC7 SNPs and skatole in Landrace. Test statistics (LogLikelihood (LRT) scores) is shown along the y axis and physical position in MegaBases (Mb) is shown along the x axis, together with genes holding significant SNPs. An additional file show the complete list of genes in the region [see Additional file 3]. The threshold of significance is indicated as a dashed line (multiple testing adjusted p = 0.001). Linkage Disequilibrium (r2) between SNPs as estimated by Haploview is plotted below and the haplotype block is indicated in red. The darker shades of black represent stronger r2. Haplotypes in the block and their frequencies are presented below the LD plot