Skip to main content

Table 2 Lineage-specific annotation results for scaffolds containing SNPs most significantly differentiating populations of L. rubellus inhabiting contaminated former mine sites and nearby control sites

From: Genetic variation in populations of the earthworm, Lumbricus rubellus, across contaminated mine sites

Marker Scaffold name Sequence length (bp) Sequence description Minimum e-value P-value Site Lineage
1 scaffold596 38,917 PREDICTED: uncharacterized protein LOC105439557 1.00E-114 2.44E-07 CWM A
2 scaffold90812 2919 ---NA--- 1.05E-06 CWM B
3 scaffold51697 8321 glutamate receptor 1- partial 4.90E-01 1.55E-06 CWM A
4 scaffold114081 3538 ubiquitin thioesterase partial 1.50E-09 1.74E-06 CWM A
5 scaffold34161 7815 techylectin- partial 2.00E-26 2.30E-06 CWM A
6 scaffold7091 27,562 organic cation transporter protein isoform x1 1.60E-06 2.98E-06 CWM A
7 scaffold65438 4451 potassium voltage-gated channel subfamily a member 3-like 0.00E + 00 6.66E-06 DGC B
8 scaffold83338 3307 polypeptide n-acetylgalactosaminyltransferase-like partial 8.40E-09 7.42E-06 DGC B
9 scaffold53218 5489 membrane metallo-endopeptidase-like partial 4.60E-11 7.94E-06 DGC B
10 scaffold111638 2040 PREDICTED: uncharacterized protein LOC106143484 2.00E-39 7.94E-06 DGC B
  1. SNPs were included when P < 1 × 10−5, as calculated using Fisher’s exact test by the Populations module of Stacks. The e-value refers to the expected number of random hits for an alignment by blastx, with lower values being more significant matches. A complete table can be found in Additional file 3