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Table 2 Analysis of differentially expressed genes related to pigmentation

From: Comparative Transcriptome and DNA methylation analyses of the molecular mechanisms underlying skin color variations in Crucian carp (Carassius carassius L.)

Gene RCC_FPKM WCC_FPKM P_value Note
Wnt2b 1.112 4.019 3.00E-50 Wnt family member 2b
Pax3a 0.853 8.546 4.00E-18 Paired box protein Pax-3a
Mitfa 0.647 2.645 1.00E-59 Microphthalmia associated transcription factor a
Foxd3 10.032 1.257 0 Forkhead box D3
Tyr 1.094 2.456 0 Tyrosinase
Tyrp1b 0.435 2.992 0 Tyrosinase-related protein 1b
Dct 0.214 2.124 2.00E-92 Dopachrome tautomerase
Silva 0.684 3.794 2.00E-113 Silver protien a
Hpda 103.485 37.312 1.00E-139 4-hydroxyphenylpyruvate dioxygenase a
Mc1r 0.863 2.111 2.00E-27 Melanocortin receptor 1
Hgd 14.715 5.784 2.00E-87 Homogentisate1,2-dioxygenase
Gch1 4.461 2.152 7.00E-23 GTP cyclohydrolase 1
Xdh 6.877 2.571 0 Xanthine dehydrogenase/oxidase
Kitla 5.989 2.667 0 Kit ligand a
Ptps 6.028 0.547 6.00E-120 6-pyruvoyl tetrahydropterin synthase
Atg4a 1.311 0.214 0 Autophagy related 4 homolog A
Atg9a 9.862 4.478 0 Autophagy related 9 homolog A
Tfe3a 9.802 4.732 1.00E-23 Transcription factor binding to IGHM enhancer 3a
C-fos 7.477 63.901 7.00E-99 C-Fos protein
Gnas 2.457 5.253 1.00E-07 Guanine nucleotide-binding protein G(s) alpha
Gch2 1.194 9.245 5.00E-172 GTP cyclohydrolase 2
Tp53 3.013 1.717 0 Tumor protein p53
Chuk 3.993 8.183 1E-136 Inhibitor of nuclear factor kappa-B kinase alpha
Il3ra 5.661 0.692 7.00E-14 Interleukin 3 receptor alpha
Il1r1 7.693 1.916 3.00E-177 Interleukin 1 receptor type I
Il-8 13.218 6.084 2.00E-26 Interleukin-8
C-fms 6.907 1.148 0 Colony stimulating factor 1 receptor
Pax6b 3.518 0.922 1.00E-50 Paired box protein Pax-6b
Tsc1a 14.976 3.016 0 Tuberous sclerosis 1a
Sox9b 4.202 2.215 9.00E-169 HMG-box transcription factor Sox9b
Erk2 2.078 4.178 0 Extracellular signal regulated protein kinase 2