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Table 2 Analysis of differentially expressed genes related to pigmentation

From: Comparative Transcriptome and DNA methylation analyses of the molecular mechanisms underlying skin color variations in Crucian carp (Carassius carassius L.)

Gene

RCC_FPKM

WCC_FPKM

P_value

Note

Wnt2b

1.112

4.019

3.00E-50

Wnt family member 2b

Pax3a

0.853

8.546

4.00E-18

Paired box protein Pax-3a

Mitfa

0.647

2.645

1.00E-59

Microphthalmia associated transcription factor a

Foxd3

10.032

1.257

0

Forkhead box D3

Tyr

1.094

2.456

0

Tyrosinase

Tyrp1b

0.435

2.992

0

Tyrosinase-related protein 1b

Dct

0.214

2.124

2.00E-92

Dopachrome tautomerase

Silva

0.684

3.794

2.00E-113

Silver protien a

Hpda

103.485

37.312

1.00E-139

4-hydroxyphenylpyruvate dioxygenase a

Mc1r

0.863

2.111

2.00E-27

Melanocortin receptor 1

Hgd

14.715

5.784

2.00E-87

Homogentisate1,2-dioxygenase

Gch1

4.461

2.152

7.00E-23

GTP cyclohydrolase 1

Xdh

6.877

2.571

0

Xanthine dehydrogenase/oxidase

Kitla

5.989

2.667

0

Kit ligand a

Ptps

6.028

0.547

6.00E-120

6-pyruvoyl tetrahydropterin synthase

Atg4a

1.311

0.214

0

Autophagy related 4 homolog A

Atg9a

9.862

4.478

0

Autophagy related 9 homolog A

Tfe3a

9.802

4.732

1.00E-23

Transcription factor binding to IGHM enhancer 3a

C-fos

7.477

63.901

7.00E-99

C-Fos protein

Gnas

2.457

5.253

1.00E-07

Guanine nucleotide-binding protein G(s) alpha

Gch2

1.194

9.245

5.00E-172

GTP cyclohydrolase 2

Tp53

3.013

1.717

0

Tumor protein p53

Chuk

3.993

8.183

1E-136

Inhibitor of nuclear factor kappa-B kinase alpha

Il3ra

5.661

0.692

7.00E-14

Interleukin 3 receptor alpha

Il1r1

7.693

1.916

3.00E-177

Interleukin 1 receptor type I

Il-8

13.218

6.084

2.00E-26

Interleukin-8

C-fms

6.907

1.148

0

Colony stimulating factor 1 receptor

Pax6b

3.518

0.922

1.00E-50

Paired box protein Pax-6b

Tsc1a

14.976

3.016

0

Tuberous sclerosis 1a

Sox9b

4.202

2.215

9.00E-169

HMG-box transcription factor Sox9b

Erk2

2.078

4.178

0

Extracellular signal regulated protein kinase 2

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BMC Genomic Data

ISSN: 2730-6844

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