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Table 4 Summary of parameters used in the PASA pipeline for the annotation comparison and minimum full length ORF size

From: An integrated and comparative approach towards identification, characterization and functional annotation of candidate genes for drought tolerance in sorghum (Sorghum bicolor (L.) Moench)

Annotation comparison Minimum full length ORF size
Parameters Minimum % Parameters Minimum value
Genomic overlap 50 Annotation version 2
Protein coding 40 Maximum utr exons 2
Length for non-full-length compare 70 Compare ID 2
Length for full-length compare 70 Trust full length status 0
Predicted protein compare 70 stomp 0
Alignment length 70 Minimum % overlap 80