From: Novel methods for genotype imputation to whole-genome sequence and a simple linear model to predict imputation accuracy
Scenario
Overall R2
Time/Animal
Concordance
Concordance MAF < 0.05
All
0.819
0:03:47
0.934
0.974
ADMIXTURE
0.810
0:03:48
0.931
0.973
PLINK Genotype
0.807
0:03:37
0.930
PLINK Haplotype
0:03:44