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Table 2 Sequence variants associated with three panicle-related traits in two field tests

From: Association between sequence variants in panicle development genes and the number of spikelets per panicle in rice

2013 2014
Site PL PB SB PL PB SB
p r 2 p r 2 p r 2 p r 2 p r 2 p r 2
APO1             
 11 sites in LDa 0.001 0.180 0.014 0.109
 948      0.003 0.191      0.032 0.123
APO2             
 102, 888b 0.007 0.123 0.012 0.112
DEP1             
 41 0.003 0.053 0.035 0.038
 314c 0.011 0.039 0.005 0.064
 683, 970c 0.006 0.060 0.004 0.089
FON1             
 1062 0.045 0.036 0.024 0.056
HD1             
 10 sites in LDd 0.001 0.089 0.011 0.070
 646 0.006 0.064 0.012 0.067
 652 0.015 0.052 0.010 0.071
 660 0.005 0.088 0.012 0.093
 1216 0.005 0.068 0.001 0.185 0.023 0.057 0.039 0.078
SP1             
 922, 983e 0.001 0.170 0.008 0.126
  1. a, 11 sites in complete LD: 40, 57, 537, 546, 627, 765, 795, 850, 951, 1005, 1188; d, 10 sites in complete LD: 248, 249, 440, 466, 469, 487, 512, 661, 1062, 1324
  2. a, b, c, d, and e were in complete LD