Skip to main content

Table 3 Estimates of the allelic effect for phenotypic variation

From: Association between sequence variants in panicle development genes and the number of spikelets per panicle in rice

Position (Position (bp)

Allele

2013

2014

PL

PB

SB

PL

PB

SB

APO1

       

 40a

A

–

–

14.4

–

–

9.9

G

–

–

0.0

–

–

0.0

 948

C

–

–

8.9

–

–

15.5

DEL

–

–

14.6

–

–

9.8

A

–

–

0.0

–

–

0.0

APO2

       

 102b

G

–

–

13.2

–

–

11.1

A

–

–

0.0

–

–

0.0

DEP1

       

 41

A

5.7

–

–

4.3

–

–

G

0.0

–

–

0.0

–

–

 314c

A

−7.4

–

–

−8.5

–

–

G

0.0

–

–

0.0

–

–

 683c

T

4.2

–

–

4.1

–

–

A

11.5

–

–

12.5

–

–

DEL

0.0

–

–

0.0

–

–

FON1

       

 1062

C

−1.3

–

–

−1.2

–

–

G

0.0

–

–

0.0

–

–

HD1

       

 247d

G

–

2.1

–

–

1.9

–

A

–

0.0

–

–

0.0

–

 646

G

–

1.9

–

–

2.0

–

DEL

–

0.0

 

–

0.0

–

 652

G

–

1.9

–

–

2.3

–

DEL

–

0.0

–

–

0.0

–

 660

C

–

1.2

–

–

1.7

–

G

–

2.7

–

 

2.9

–

DEL

 

0.0

–

–

0.0

–

 1216

A

–

−1.8

−11.9

–

−1.7

−6.8

DEL

 

0.0

0.0

–

0.0

0.0

SP1

       

 922e

G

–

–

−10.5

–

–

−8.0

A

–

–

0.0

–

–

0.0

  1. a, 11 sites in complete LD: 40, 57, 537, 546, 627, 765, 795, 850, 951, 1005, 1188; b, complete LD with 888; c, complete LD with 970; d, 10 sites in complete LD: 248, 249, 440, 466, 469, 487, 512, 661, 1062, 1324; e, complete LD with 983