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Table 3 Estimates of the allelic effect for phenotypic variation

From: Association between sequence variants in panicle development genes and the number of spikelets per panicle in rice

Position (Position (bp) Allele 2013 2014
PL PB SB PL PB SB
APO1        
 40a A 14.4 9.9
G 0.0 0.0
 948 C 8.9 15.5
DEL 14.6 9.8
A 0.0 0.0
APO2        
 102b G 13.2 11.1
A 0.0 0.0
DEP1        
 41 A 5.7 4.3
G 0.0 0.0
 314c A −7.4 −8.5
G 0.0 0.0
 683c T 4.2 4.1
A 11.5 12.5
DEL 0.0 0.0
FON1        
 1062 C −1.3 −1.2
G 0.0 0.0
HD1        
 247d G 2.1 1.9
A 0.0 0.0
 646 G 1.9 2.0
DEL 0.0   0.0
 652 G 1.9 2.3
DEL 0.0 0.0
 660 C 1.2 1.7
G 2.7   2.9
DEL   0.0 0.0
 1216 A −1.8 −11.9 −1.7 −6.8
DEL   0.0 0.0 0.0 0.0
SP1        
 922e G −10.5 −8.0
A 0.0 0.0
  1. a, 11 sites in complete LD: 40, 57, 537, 546, 627, 765, 795, 850, 951, 1005, 1188; b, complete LD with 888; c, complete LD with 970; d, 10 sites in complete LD: 248, 249, 440, 466, 469, 487, 512, 661, 1062, 1324; e, complete LD with 983