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Table 1 Most significant non-additive genetic markers associated with Sire Conception Rate

From: Whole-genome scan reveals significant non-additive effects for sire conception rate in Holstein cattle

Marker

Chr.

Position

MAF

Gen Freq.

β ± se

P NonAdd

P Add

Dominance

 BTA-21730-no-rs

8

74,336,311

0.145

145 (AA)

1.33 ± 0.18

5.9 × 10−13

1.1 × 10−05

1870 (AB)

5443 (BB)

 Hapmap50123-BTA-83561

9

43,054,017

0.062

17 (AA)

4.49 ± 0.51

9.2 × 10−19

3.1 × 10−02

885 (AB)

6556 (BB)

 BTB-00534589

13

60,300,299

0.150

148 (AA)

1.47 ± 0.18

3.3 × 10−16

1.4 × 10−03

1942 (AB)

5367 (BB)

 BTB-00682926

17

66,268,354

0.142

103 (AA)

1.79 ± 0.21

5.0 × 10−17

1.6 × 10−02

1917 (AB)

5437 (BB)

Recessive

 Hapmap50918-BTA-23068

8

68,404,576

0.256

4095 (AA)

−0.60 ± 0.11

8.6 × 10−08

3.5 × 10−02

2905 (AB)

458 (BB)

 Hapmap58840-rs29018856

13

58,529,087

0.128

5644 (AA)

−1.81 ± 0.22

1.5 × 10−16

2.7 × 10−03

1715 (AB)

99 (BB)

 BTB-01301223

17

64,049,290

0.171

5073 (AA)

−1.06 ± 0.17

5.0 × 10−10

5.6 × 10−02

2219 (AB)

166 (BB)

  1. MAF minor allele frequency
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BMC Genomic Data

ISSN: 2730-6844

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