Genetic insights into dispersal distance and disperser fitness of African lions (Panthera leo) from the latitudinal extremes of the Kruger National Park, South Africa

van Hooft, Pim; Keet, Dewald F.; Brebner, Diana K.; Bastos, Armanda D. S.

doi:10.1186/s12863-018-0607-x

Table 1 MtDNA haplotypes, encoded repeats of the RS-3 region

From: Genetic insights into dispersal distance and disperser fitness of African lions (Panthera leo) from the latitudinal extremes of the Kruger National Park, South Africa

					DNA sequence
Reference (Serengeti)					efb\|ba2\|ba2\|ba2\|ba5\|c-\|a8\|a13\|-\|-\|-\|cg
Northern Kruger
Ind nr	Sex	Age yr	Social group	H nr
1	M	3	I	1	efb\|ba2\|ba2\|ba2\| ba \|cd\|a8\| a7 \|b2\| c2 \| c2 \|cg
2	F	3	K&F	1	efb\|ba2\|ba2\|ba2\| ba \|cd\|a8\| a7 \|b2\| c2 \| c2 \|cg
3	F¹	7	G	2	efb\|ba2\|ba2\|ba2\| ba3 \|cd\|a8\| a3 \|b2\| c2 \| c2 \|cg
4	F	6	C	3	efb\|ba2\|ba2\|ba2\| ba4 \|cd\|a8\| a3 \|b2\| c2 \| c2 \|cg
5	F	6	K&F	3	efb\|ba2\|ba2\|ba2\| ba4 \|cd\|a8\| a3 \|b2\| c2 \| c2 \|cg
6	F	4	K&F	3	efb\|ba2\|ba2\|ba2\| ba4 \|cd\|a8\| a3 \|b2\| c2 \| c2 \|cg
7	F	5	K&F	4	efb\|ba2\|ba2\|ba2\| ba4 \|cd\|a8\| a4 \|b2\| c2 \| c2 \|cg
8	F	7	G	4	efb\|ba2\|ba2\|ba2\| ba4 \|cd\|a8\| a4 \|b2\| c2 \| c2 \|cg
9	F	14	G	4	efb\|ba2\|ba2\|ba2\| ba4 \|c?\|a8\| a4 \|b2\| c2 \| c2 \|cg
10	F	4	Q	5	efb\|ba2\|ba2\|ba2\| ba4?a \|cd\|a8\| a2 \|b2\| c2 \| c3 \|cg
11	M	1.2	R	6	efb\|ba2\|ba2\|ba2\| ba4 \|cd\|a8\| - \|b2\| c2 \| - \|cg
12	M	6	K&F	6	efb\|ba2\|ba2\|ba2\| ba4 \|cd\|a8\| - \|b2\| c2 \| - \|cg
13	F	4	Q	7	efb\|ba2\|ba2\|ba2\| ba5 \|cd\|a8\| - \|b2\| c2 \| - \|cg
14	F	6	Q	7	efb\|ba2\|ba?a\|ba2\| ba5 \|??\|a8\| - \|b2\| c2 \| - \|cg
15	M	7	C	8	efb\|ba2\|ba2\|ba2\| ba7 \|cd\|a8\| - \|b2\| c2 \| - \|cg
16	F	8	Q	8	efb\|ba2\|ba2\|ba2\| ba7 \|cd\|a8\| - \|b2\| c2 \| - \|cg
Southern Kruger
Ind nr	Sex	Age yr	Social group	H nr
Sabi Sands
17	M	2.5	Hb^#	9	efb\|ba2\|ba2\|ba2\| ba4 \|cd\|a8\| a12 \|-\| - \| - \|cg
18	M	2	Hb^#	10	efb\|ba2\|ba2\|ba2\| ba4 \|cd\|a8\| a15 \|-\| - \| - \|cg
South of Sabie River
19	M	4.5	J^#	11	efb\|ba2\| ba2 \|-aba\| a2 \|b3\|?\|a2\| a \| b \| ba \|a5\|b\|a2\|b\|a3\|b3\|a\|cg
20	F	3	EX-A	12	efb\|ba2\| -aba \|-aba\| - \|b3\|b\|a2\| a \| b \| ba \|a5\|b\|a2\|b\|a3\|b3\|a\|cg
21	F	10	B	12	efb\|ba2\| -aba \|-aba\| - \|b3\|b\|a2\| a \| b \| ba \|a5\|b\|a2\|b\|a3\|b3\|a\|cg
22	F	5	EX-A	13	efb\|ba2\| -aba \|-aba\| - \|b3\|b\|a2\| a2 \| b \| ba \|a5\|b\|a2\|b\|a3\|b3\|a\|cg
23	F	2.5	EX-A	14	efb\|ba2\| -aba \|-aba\| - \|b3\|b\|a2\| a3 \| b \| ba \|a5\|b\|a2\|b\|a3\|b3\|a\|cg
24	M	6	Single^#	14	efb\|ba2\| -aba \|-aba\| - \|b3\|b\|a2\| a3 \| ? \| ba \|a5\|b\|a2\|b\|a3\|b3\|a\|cg
25	F	12	D	15	efb\|ba2\| -aba \|-aba\| - \|b3\|b\|a2\| a4 \| b \| ba \|a5\|b\|a2\|b\|a3\|b3\|a\|cg
26	F	3	B	16	efb\|ba2\| -aba \|-aba\| - \|b3\|b\|a2\| a3 \| - \| ba \|a5\|b\|a2\|b\|a3\|b3\|a\|cg
27	F	3	B	16	efb\|ba2\| -aba \|-aba\| - \|b3\|b\|a2\| a3 \| - \| ba \|a5\|b\|a2\|b\|a3\|b3\|a\|cg
28	F	10	Single^#	17	efb\|ba2\| -aba \|-aba\| a4 \|b3\|b\|a2\| a3 \| b \| b2 \|a5\|b\|a2\|b\|a3\|b3\|a\|cg

A = TACACG; b = TACACACG; c = TATACACG; d = TACGCACG, e = TATACGCG, f = CACATGTG, g = TATACACATG. Numbers indicate number of repeats, eg. ba2 = baba. 1: one parent was probably a long-distance disperser according to Structure analysis, locally polymorphic sites are underlined, ?: missing data, −: gap, #: non-territorial individual. Reference sequence: Ple181–1 in [40]

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