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Table 4 Variances explained by genome-wide significantly associated SNPs

From: Genetics of resistance to photobacteriosis in gilthead sea bream (Sparus aurata) using 2b-RAD sequencing

SA Locus ID Pos Allele1 Allele2 MAF α SE P-value %varG %varP
17 248936_32 44.729 G T 0.278 −0.163 0.026 6.69e-10 13.281 4.406
17 24643_19 49.430 A G 0.467 −0.139 0.023 2.55e-09 11.922 3.955
17 283885_36 44.372 G C 0.343 −0.140 0.024 3.03e-09 10.929 3.626
17 81173_9 40.766 A G 0.362 −0.132 0.024 3.74e-08 9.892 3.282
17 211563_28 53.066 A G 0.353 −0.143 0.026 4.61e-08 11.512 3.819
17 265801_18 37.385 T C 0.321 −0.132 0.025 1.78e-07 9.457 3.137
17 95842_16 51.835 G C 0.425 0.116 0.023 5.53e-07 8.113 2.692
17 225775_29 40.582 T C 0.367 0.122 0.025 9.84e-07 8.570 2.843
17 213907_2 50.873 C G 0.348 0.114 0.024 2.01e-06 7.278 2.414
17 3001_36 48.242 A G 0.238 −0.134 0.028 2.09e-06 8.018 2.660
17 53157_6 44.333 T C 0.179 −0.151 0.032 2.18e-06 8.226 2.729
  1. SA linkage group number for gilthead sea bream (Sparus aurata, SA), Pos (cM) genetic map position of SNP, A1 & A2 minor & major alleles, respectively, MAF minor allele frequency, α Allele substitution effect, SE standard error, P aignificance value, varG proportion of genotypic variance explained, varP proportion of phenotypic variance explained