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Table 3 Genotype profiles of some R wheat cultivars for three Hessian fly response genes, HfrDrd, Hfr-1 and Hfr-2 and the H32 gene

From: Development of SNP assays for hessian fly response genes, Hfr-1 and Hfr-2, for marker-assisted selection in wheat breeding

Wheat Accessions

# cultivars

Locality

Phenotype

aSNP143_HfrDrd

SNP883_Hfr-1

bSNP1294_Hfr-2

csynopGBS901 H32

cIWB65911 H32

Chrom location

   

7DS/7AS

7DS/4AL

2BS/2DL/4BS/4BL/5AL/5BL

3DL

3DL

d78 wheat cultivars

78

dvarious

eS

C:C

A:A

T:T

G:G

A:G

d131 wheat cultivars

131

dvarious

S

C:C

A:G

T:T

G:G

A:G

Sunguard

1

Aus

S

C:C

A:G

T:T

C:G

A:G

NS732/HER*2//Saada, Ouassou-18, Morsud-31, Miskeet-3, Miskeet-8, Miskeet-18, Haala-34, Doukkala-1

8

Mor

fR

C:C

A:G

T:T

G:G

A:G

KS92WGRC20, Ella, AUS28747, KS89WGRC03, KS89WGRC04, Monon, Ribeiro

7

various

R

C:C

A:A

T:T

G:G

A:G

AUS90809, Haala-35

2

USA, Mor

R

C:T

A:A

T:T

G:G

A:G

Clark

1

USA

R

C:C

G:G

T:T

G:G

A:G

CIGM93.226-0SY

1

Mex

R

C:C

A:A

C:T

G:G

A:G

Langdon, CIGM93.203-OSY

2

USA, Mex

R

C:C

A:G

T:T

C:G

A:G

KS89WGRC06 (AUS90812)

1

USA

R

C:C

A:A

T:T

C:C

G:G

CIGM90.906

1

Mex

R

C:T

A:G

T:T

C:G

A:G

CIGM90.812-03WM-0Y

1

Mex

R

T:T

A:G

C:T

G:G

A:G

CIGM93.205

1

Mex

R

C:C

G:G

T:T

C:C

G:G

KS93WGRC26 (AUS26929)

1

USA

R

C:T

G:G

T:T

C:G

?

Lola_1, CIGM86.941, CIGM86.941-1B-0B-0B

3

USA, Mex

R

T:T

G:G

T:T

C:G

G:G

CIGM90.543, AUS30625

2

Mex

R

T:T

G:G

C:T

G:G

A:G

M6

1

Mex

R

C:C

G:G

C:T

C:C

G:G

CIGM86.942-1B-0PR-0, CIGM90.898

2

Mex

R

T:T

A:G

C:C

C:C

G:G

AUS26847, CASW02GH00010S, CASS03GH00001S

3

Mex

R

T:T

G:G

C:T

C:C

A:G

CIGM86.950, CIGM86.950-1 M-1Y-0B

2

Mex

R

T:T

G:G

C:T

C:C

G:G

  1. a[19]
  2. bThe SNP1294_Hfr-2 assay distinguished a ‘C/T’ SNP which is the reverse complement of the ‘G/A’ SNP in the coding sequence
  3. c[34]
  4. dRefer to Additional file 2: Table S2 for details
  5. eS = 100% susceptible
  6. fR = resistant to the Hessian fly biotype in Morocco [19]
  7. Nt in bold indicates genotype associated with the resistant variant/allele of the corresponding gene in the cultivar