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Table 1 Candidate gene data for the 15 SNPs significantly associated with reniform nematode resistance identified from genome-wide association study

From: Genome-wide association study of Gossypium arboreum resistance to reniform nematode

Marker Chr Position Candidate gene Description R2a R2
S1_1431996298 6 21296008 Cotton_A_17782 DNA-directed primase polymerase protein isoform ×1 0.08 0.15
S1_1432469614 6 21769324 Cotton_A_17731 cct motif family protein 0.08 0.14
S1_1387000550 9 72903560 Cotton_A_02972 chaperonin cpn60- mitochondrial 0.08 0.13
S1_634724595 12 93797765 Cotton_A_06029 pentatricopeptide repeat-containing protein at1g16830 0.08 0.13
S1_634724647 12 93797817 Cotton_A_06029 pentatricopeptide repeat-containing protein at1g16830 0.08 0.13
S1_1238998071 3 27838614 Cotton_A_03279 coproporphyrinogen iii oxidase 0.08 0.13
S1_842793872 7 18184817 Cotton_A_14237 leucine-rich repeat protein kinase family 0.08 0.13
S1_842793960 7 18184905 Cotton_A_14237 leucine-rich repeat protein kinase family 0.08 0.13
S1_917690183 7 93081128 Cotton_A_29428 apo protein chloroplastic-like 0.08 0.12
S1_501185184 1 107382510 Cotton_A_24022 restin homolog 0.08 0.12
S1_1380184051 9 66087061 Cotton_A_12928 cytochrome p450 86a1 0.08 0.12
S1_303538481 2 70449510 Cotton_A_00283 wound-induced protein 1-like 0.08 0.12
S1_662779880 12 121853050 Cotton_A_18631 eukaryotic translation initiation factor 2 family protein isoform 2 0.08 0.12
S1_352262064 5 18150534 Cotton_A_17988 pre-mrna-processing factor 6-like 0.08 0.12
S1_842793792 7 18184737 Cotton_A_14237 leucine-rich repeat protein kinase family 0.08 0.12
  1. Chr chromosome, R2a R square of model without SNP, R2 R square of model with SNP