Table 1 Candidate gene data for the 15 SNPs significantly associated with reniform nematode resistance identified from genome-wide association study
From: Genome-wide association study of Gossypium arboreum resistance to reniform nematode
Marker | Chr | Position | Candidate gene | Description | R2a | R2 |
|---|---|---|---|---|---|---|
S1_1431996298 | 6 | 21296008 | Cotton_A_17782 | DNA-directed primase polymerase protein isoform ×1 | 0.08 | 0.15 |
S1_1432469614 | 6 | 21769324 | Cotton_A_17731 | cct motif family protein | 0.08 | 0.14 |
S1_1387000550 | 9 | 72903560 | Cotton_A_02972 | chaperonin cpn60- mitochondrial | 0.08 | 0.13 |
S1_634724595 | 12 | 93797765 | Cotton_A_06029 | pentatricopeptide repeat-containing protein at1g16830 | 0.08 | 0.13 |
S1_634724647 | 12 | 93797817 | Cotton_A_06029 | pentatricopeptide repeat-containing protein at1g16830 | 0.08 | 0.13 |
S1_1238998071 | 3 | 27838614 | Cotton_A_03279 | coproporphyrinogen iii oxidase | 0.08 | 0.13 |
S1_842793872 | 7 | 18184817 | Cotton_A_14237 | leucine-rich repeat protein kinase family | 0.08 | 0.13 |
S1_842793960 | 7 | 18184905 | Cotton_A_14237 | leucine-rich repeat protein kinase family | 0.08 | 0.13 |
S1_917690183 | 7 | 93081128 | Cotton_A_29428 | apo protein chloroplastic-like | 0.08 | 0.12 |
S1_501185184 | 1 | 107382510 | Cotton_A_24022 | restin homolog | 0.08 | 0.12 |
S1_1380184051 | 9 | 66087061 | Cotton_A_12928 | cytochrome p450 86a1 | 0.08 | 0.12 |
S1_303538481 | 2 | 70449510 | Cotton_A_00283 | wound-induced protein 1-like | 0.08 | 0.12 |
S1_662779880 | 12 | 121853050 | Cotton_A_18631 | eukaryotic translation initiation factor 2 family protein isoform 2 | 0.08 | 0.12 |
S1_352262064 | 5 | 18150534 | Cotton_A_17988 | pre-mrna-processing factor 6-like | 0.08 | 0.12 |
S1_842793792 | 7 | 18184737 | Cotton_A_14237 | leucine-rich repeat protein kinase family | 0.08 | 0.12 |