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Table 3 Counts of markers used for the second round of the linkage analysis

From: Enhancement of Glen Moy x Latham raspberry linkage map using GbS to further understand control of developmental processes leading to fruit ripening

Chromosome Possible AOxBO nulls Total No. of markers in JM input file No. carried to MDS analysis Mapped markers Latham (ABxAA) Moy (AAxAB) Both (ABxAB +ABxCD) Null (AOxAB or ABxAO) Null (AOxBO) Length (cM) HMM_mean for MDS order HMM_mean after swaps
LG1 25 471 331 295 223 33 7 + 1 19 12 114.1 1.48 1.25
LG2 65 737 494 456 286 90 10 + 4 34 32 107.1 1.65 1.42
LG3 21 933 603 557 447 45 9 + 4 39 13 128.2 1.77 1.67
LG4a 79 667 448 435 253 70 25 + 5 39 43 91.5 1.29 1.25
LG5 83 739 509 486 287 66 18 + 8 63 44 85.4 1.42 1.27
LG6 12 514 369 315 284 15 1 + 1 9 5 88.6 1.95 1.52
LG7 16 396 252 243 216 11 0 10 6 100.2 1.93 1.55
  1. HMM_mean denotes the mean number of recombinations inferred using a HMM
  2. a The LG4 map is fitted using LOD2 weighting and 2d MDS, which fitted better than LOD2 weighting and 3d MDS