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Table 5 Summary of traits linked to genes with roles in flowering and fruit ripening (full data available in Additional file 4: Table S1)

From: Enhancement of Glen Moy x Latham raspberry linkage map using GbS to further understand control of developmental processes leading to fruit ripening

Trait

QTL

Genes identified with GO annotation: Biological processes

Days to open flowers

LG2 85 cM

carpel, flower, stamen embryo development

LG3 17 cM

flowering, photoperiodism, flower, embryo development

LG3 62 cM

embryogenesis, post-embryonic development, flower development

LG5 40 cM

photoperiodism, embryo development

%Open flowers

LG3 66 cM

embryo development, post-embryonic development, pollen tube growth and recognition

Days to Fruit set

LG3 76 cM

negative regulation of flowering and floral meristem cell accumulation, cell wall organisation and signalling processes

LG3 102 cM

embryo development, embryogenesis, pollen development, pollen recognition

LG5 1 cM

embryo development, pollen development and cell wall development

LG6 9 cM

embryo development and cell division

LG7 20 cM

fertility, embryo development, flowering, pollen development and inflorescence development

Days to green fruit

LG3 49 cM

plant growth, signalling and seed coat development

LG3 105 cM

embryo, endosperm and pollen development, pollen recognition, transport and signalling

LG5 1 cM

regulation of flowering period, embryo development, pollen development and cell wall development

LG6 9 cM

embryo development, cell division and regulation

Days to green/red fruit

LG4 39 cM

embryo development ending in seed dormancy, seed maturation and cell wall modification

LG6 3 cM

cell wall organisation

LG6 46 cM

fruit embryo development ending in seed dormancy

Days to red fruit

LG2 57 cM

post-embryonic development, embryo development ending in seed dormancy and cell growth

LG3 8 cM & 9 cM

embryo development, floral organ morphogenesis, seed development, cell expansion, cell wall organisation negative regulation of flowering

LG4 42 cM

pectin lyase, cell wall organisation, embryo seed development

Late fruiting

LG2 86 cM

meristem determinacy, flower development, flowering and embryo development

Speed of ripening (PCO1)

LG2 63 cM

vegetative to reproductive change, pollen and embryo development, post-embryonic development, anthocyanin and flavonoid biosynthesis

LG3 17 cM

flowering, photoperiodism, flower and embryo development, response to light intensity

LG3 56 cM

development of flower parts, photoperiodism, embryo development, anthocyanin accumulation

LG5 40 cM

photoperiodism, embryo development

LG3 94 cM

light signalling, response to light, flower and ovule (in June) development

Comparison between later and earlier scores (PCO2)

LG3 94 cM

flower development, light signalling, flowering, long day photoperiodism, embryo, flower, ovule development

LG4 35 cM

flower development, embryo development, flowering, ovule development

LG5 72 cM

floral meristem identity, flowering, flower development, pollen development, embryo development, post-embryo development

LG6 3 cM

cell wall organisation

PCO4 Similar to PCO2

LG2 88 cM

meristem determinacy, flower development, flowering and embryo development

LG3 76 cM

negatively regulating flowering and floral meristem cell accumulation, cell wall organisation and signalling processes, flowering, anther development embryo development

LG5 17 cM

embryo development, negative regulation of flower development

LG6 5 cM

embryo development