Skip to main content

Table 3 Genome-wide significant SNPs for CE and suggestive genome-wide significant SNPs for BT and NG

From: A genome-wide association study for harness racing success in the Norwegian-Swedish coldblooded trotter reveals genes for learning and energy metabolism

SNP Analysis Location (ECA:bp) MAF β SE Var (%) Nearest gene Distance to nearest gene (bp) Raw p-value
AX-104828170 CE 28:20,006,740 0.018 −3.380 0.552 3.85 NDUFA12 114,732 9.01E-10
AX-103147507 CE 28:22,153,465 0.005 −5.762 1.011 3.27 ENSECAG00000025907 46,196 1.20E-08
AX-104611735 CE 6:47,132,529 0.015 −3.407 0.599 3.16 PDE3A 0 1.28E-08
AX-104865129 CE 16:18,366,321 0.008 −4.488 0.798 3.17 ENSECAG00000003087/PROK2 138,149/138,791 1.87E-08
AX-104494389 CE 6:20,020,914 0.006 −4.557 0.825 3.32 INPP5D 0 3.36E-08
AX-103248294 CE 6:49,512,490 0.016 −3.166 0.582 3.11 SOX5 0 5.28E-08
AX-103090138 CE 6:42,063,985 0.018 −3.007 0.559 2.46 PLBD1 3191 7.48E-08
AX-104711589 CE 6:41,462,481 0.012 −3.497 0.657 2.59 GRIN2B 0 9.99E-08
AX-104307051 CE 6:41,329,519 0.012 −3.474 0.657 2.67 GRIN2B 0 1.21E-07
AX-104144838 NG 23:23,333,501 0.278 −0.214 0.046 1.51 ENSECAG00000023609 187,643 3.18E-06
AX-104568609 NG 1:159,285,045 0.004 −1.343 0.293 1.14 ENSECAG00000003696/ENSECAG00000022264 19,813/25,804 4.52E-06
AX-102982528 NG 23:23,324,996 0.412 −0.186 0.041 1.27 ENSECAG00000023609 179,138 6.74E-06
AX-103734745 NG 29:24,530,437 0.453 −0.176 0.040 1.29 ENSECAG00000004576 944,126 8.67E-06
AX-104373992 BT 1:162,993,722 0.016 3.289 0.655 1.79 ENSECAG00000023062/ENSECAG00000008721 32,728/51,254 5.10E-07
AX-103261370 BT 23:22,522,071 0.409 −0.910 0.183 0.87 DOCK8 0 6.49E-07
AX-104219924 BT 17:19,525,955 0.279 0.946 0.197 2.24 WDFY2 0 1.57E-06
AX-104634248 BT 23:21,857,316 0.108 1.346 0.284 1.21 PIP5K1B/FAM122A 14,893/18,794 2.20E-06
AX-103287280 BT 23:21,064,571 0.117 1.270 0.268 1.49 PTAR1 43,300 2.22E-06
AX-104645782 BT 17:19,318,167 0.258 0.951 0.201 2.21 ATP7B 0 2.32E-06
AX-103762427 BT 23:22,461,979 0.154 −1.156 0.245 1.37 DOCK8 0 2.45E-06
AX-103530176 BT 23:22,464,604 0.156 −1.139 0.246 1.25 DOCK8 0 3.49E-06
AX-103445942 BT 1:151,919,692 0.012 3.600 0.777 1.39 ENSECAG00000012236/ENSECAG00000013533 74,605/78,356 3.63E-06
AX-104538418 BT 17:21,083,126 0.279 0.905 0.196 2.29 KCNRG 0 3.99E-06
AX-104268231 BT 23:21,689,609 0.385 −0.823 0.179 0.79 PIP5K1B 0 4.25E-06
AX-102964033 BT 23:22,423,197 0.121 −1.259 0.275 0.95 DOCK8 5699 4.59E-06
AX-104117851 BT 7:65,266,179 0.010 3.724 0.821 1.76 ENSECAG00000007398 162,661 5.78E-06
AX-104642194 BT 31:14,300,483 0.006 4.612 1.021 1.37 MTRF1L/FBXO5 108/14,491 6.31E-06
AX-103166989 BT 23:22,496,787 0.116 −1.270 0.283 0.99 DOCK8 0 7.07E-06
AX-103803214 BT 2:21,466,714 0.049 1.725 0.386 1.82 AGO1 2494 7.72E-06
AX-104450418 BT 2:21,311,680 0.087 1.351 0.304 1.93 TEKT2/ADPRHL2 10,587/14,440 9.00E-06
AX-103305676 BT 25:26,866,219 0.019 2.590 0.584 1.67 OR1L3 492 9.11E-06
AX-104591507 BT 17:20,813,164 0.249 0.898 0.203 1.84 KCNRG 227,34 9.36E-06
  1. CE career earnings, BT Best km time, NG number of gallop, MAF Minor allele frequency, β Estimated allele substitution effect, Var (%) Percentage of phenotypic variance explained
  2. Red line = Bonferroni threshold (P < 1.39 × 10−7)