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Table 4 Assessment of transcription changes of genes with given alterations in the coding sequences

From: Exome scale map of genetic alterations promoting metastasis in colorectal cancer

Sample ID 10.PT1 10.PT2 10.PT3 10.PT4 10.PT5 10.PT6 10.MT 5.MT 7.PT1 7.PT2 7.PT3 7.PT4 7.MT 12.PT 12.MT
stopgain 0.6 0.9 0.6 1.9 0.3 1.4 0.2 0.3 0.1   0.1    1.1 0.4
non silent 7.4 8.1 7.5 8.8 4.5 6.9 0.7 0.5 0.5 0.0 0.2 1.3 0.4 Inf 2.1
silent exonic 1.7 1.2 3.8 4.4 1.1 3.0 0.1 0.3 1.1 0.3 0.4 0.6 1.5 8.2 1.2
indels all 0.2 0.6 0.8 0.2 1.0 0.7 0.3 0.3 3.3 0.5 0.4 0.3 0.0 2.3 0.1
  1. Given values are -log10 of p-value from Kolmogorow-Smirnoff test of altered vs non-altered genes (see methods). Bold highlights significant association (values greater than -log10(0.05)). Inf - values greater than 10