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Table 2 Annotation of genes containing SNPs associated with gene expression or metabolite level related to wood development

From: Exploring the genetic basis of gene transcript abundance and metabolite levels in loblolly pine (Pinus taeda L.) using association mapping and network construction

SNP#

Gene function

SNP#

Gene function

1

aBTB-POZ and MATH domain 6

27

pentatricopeptide repeat-containing

2

heat shock cognate 71 kDa protein

28

sugar transport protein 7-like

3

adormancy/auxin associated family

29

uninformative

4

alipoxygenase LOX2

30

E3 ubiquitin-protein ligase RHA1B-like

5

transmembrance protein, UPF0481

31

aspartokinase 3, chloroplastic-like

6

clathrin assembly protein, putative

32

uninformative

7

laccase 5

33

transcription factor GAMYB

8

1-phosphatidylinositol 3-phosphate

34

putative peptide/nitrate transporter

9

pleiotropic drug resistance protein

35

eukaryotic translation initiation

10

pleiotropic drug resistance protein

36

60S ribosomal protein L8

11

cytochrome P450 71A1-like

37

disease resistance family protein / LRR family

12

D-xylose-proton symporter-like 2-like

38

uninformative

13

pleiotropic drug resistance protein

39

putative peptide/nitrate transporter

14

putative chloroplast nucleoid DNA binding protein

40

D-xylose-proton symporter-like 3

15

aocticosapeptide/Phox/Bem1p domain

41

laccase-15-like

16

zinc finger A20 and AN1

42

L-lactate dehydrogenase A isoform X2

17

probable arabinosyltransferase ARAD1

43

chalcone synthase

18

adisease resistance protein

44

serine/threonine-protein

19

awall associated kinase 3

45

not_annotated

20

aU1 snRNP 70 K truncated protein

46

GTP pyrophosphokinase-like

21

calcium-dependent protein kinase

47

beta-galactosidase 8-like

22

pleiotropic drug resistance protein

48

zinc finger protein, putative

23

probable LRR receptor-like

49

glutaredoxin-C1

24

histone H2A 11

50

tir-nbs-lrr resistance protein

25

CBL-interacting protein kinase 04

51

tubulin-folding cofactor D-like

26

acytochrome P450 CYP866A1

52

early endosome antigen 1

  1. aBased on the NCBI blastx results
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BMC Genomic Data

ISSN: 2730-6844

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