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Table 3 Summary of significant chromosome regions for number mummified (NM) at genomic level in Large White population

From: A genome wide association study for the number of animals born dead in domestic pigs

Parity SSC Range (Mb) Number Position(bp) Alleles P value Candidate Gene
2 1 32.30–32.34 2 32,322,537 A/G 1.10E-07 AKAP7
2 1 185.49–185.53 3 185,506,783 C/A 1.04E-07  
2 4 133.07–133.11 2 133,090,486 A/G 1.90E-07  
3 2 159.12–159.35 13 159,334,109 C/T 9.58E-14  
3 18 15.29–15.42 8 15,306,205 A/G 1.05E-11 EXOC4
4 2 53.53–53.57 5 53,550,664 A/T 8.13E-08  
4 5 36.73–36.77 5 36,749,866 T/G 8.50E-08  
4 5 49.74–53.88 28 49,763,855 A/G 2.89E-08 SOX5/ST8SIA1/KCNJ8/ABCC9/GYS2/SPX/GOLT1B/PLEKHA5
4 7 116.70–116.74 2 116,719,034 G/T 1.32E-10 SYNE3
4 15 62.98–63.02 14 63,000,645 A/T 9.45E-10  
5 2 14.95–14.99 7 14,966,625 G/A 1.06E-09 AGBL2/MTCH2
5 2 52.21–52.25 2 52,227,328 T/C 2.76E-09 LOC100525099
5 3 27.64–27.90 4 27,657,943 T/A 1.68E-08  
5 4 62.24–62.28 2 62,259,407 A/C 6.18E-13 STAU2
5 7 121.12–121.16 5 121,138,988 C/G 2.16E-08 YY1
5 8 5.54–5.58 2 5,558,816 A/G 6.84E-08  
5 10 21.60–21.64 3 21,623,235 C/T 3.25E-15  
5 15 52.89–52.93 4 52,912,314 T/C 1.44E-09  
5 17 50.86–50.90 2 50,880,718 T/G 2.49E-10 STAU1
  1. Range Range of significant chromosome region, Number Number of SNP involved, Position Position of top SNP, Alleles Alleles of top SNP, Candidate Gene Gene found in the range