Seedless mutant ‘Wuzi Ougan’ (Citrus suavissima Hort. ex Tanaka ‘seedless’) and the wild type were compared by iTRAQ-based quantitative proteomics and integratedly analyzed with transcriptome to improve understanding of male sterility

Zhang, Chi; Yu, Dihu; Ke, Fuzhi; Zhu, Mimi; Xu, Jianguo; Zhang, Min

doi:10.1186/s12863-018-0693-9

Table 6 Identification of Phenylpropanoid metabolism proteins in the development anther

From: Seedless mutant ‘Wuzi Ougan’ (Citrus suavissima Hort. ex Tanaka ‘seedless’) and the wild type were compared by iTRAQ-based quantitative proteomics and integratedly analyzed with transcriptome to improve understanding of male sterility

Map ID and Map name	Enzyme and Definition	Protein ID	KO	Stage 1	Stage 2	Stage 3
Phenylpropanoid biosynthesis(ko00940)	CYP98A3 [EC:1.14.13.36]	Ciclev10011520m	K09754	1.32	2.08	0.70
	PAL phenylalanine ammonia-lyase [EC:4.3.1.24]	Ciclev10027912m	K10775	0.71	0.75	0.89
	PAL phenylalanine ammonia-lyase [EC:4.3.1.24]	Ciclev10011175m	K10775	0.76	0.78	0.95
	CAD cinnamyl-alcohol dehydrogenase [EC:1.1.1.195]	Ciclev10025933m	K00083	0.78	1.01	1.05
	CAD cinnamyl-alcohol dehydrogenase [EC:1.1.1.195]	Ciclev10028718m	K00083	0.82	0.88	0.89
	POD peroxidase [EC:1.11.1.7]	Ciclev10032081m	K00430	1.19	1.55	0.89
		Ciclev10012179m	K00430	1.40	1.48	0.89
		Ciclev10001726m	K00430	1.01	1.02	0.80
		Ciclev10015870m	K00430	0.98	0.82	1.03
		Ciclev10015790m	K00430	0.81	0.71	0.81
	COMT caffeic acid 3-O-methyltransferase [EC:2.1.1.68]	Ciclev10020821m	K13066	0.85	0.82	1.04
	COMT caffeic acid 3-O-methyltransferase [EC:2.1.1.68]	Ciclev10031951m	K13066	1.18	0.78	0.64
	CCoAOMT caffeoyl-CoA O-methyltransferase [EC:2.1.1.104]	Ciclev10029158m	K00588	0.98	0.89	0.81
	4CL 4-coumarate-CoA ligase [EC:6.2.1.12]	Ciclev10031133m	K01904	1.00	1.14	0.35
Phenylalanine metabolism(ko00360)	PAL phenylalanine ammonia-lyase [EC:4.3.1.24]	Ciclev10027912m	K10775	0.71	0.75	0.89
	PAL phenylalanine ammonia-lyase [EC:4.3.1.24]	Ciclev10011175m	K10775	0.76	0.78	0.95
	PAT,AAT bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase [EC:2.6.1.1;2.6.1.78;2.6.1.79]	Ciclev10025283m	K15849	1.06	1.22	1.00
	MIF migration inhibitory factor [EC:5.3.2.1]	Ciclev10013148m	K07253	0.95	0.80	1.12
	CCoAOMT caffeoyl-CoA O-methyltransferase [EC:2.1.1.104]	Ciclev10029158m	K00588	0.98	0.89	0.81
	4CL 4-coumarate-CoA ligase [EC:6.2.1.12]	Ciclev10031133m	K01904	1.00	1.14	0.35
Flavonoid biosynthesis (ko00941)	CYP98A3 [EC:1.14.13.36]	Ciclev10011520m	K09754	1.32	2.08	0.70
	CHS chalcone synthase [EC:2.3.1.74]	Ciclev10015535m	K00660	0.77	0.75	0.99
	CHI chalcone isomerase [EC:5.5.1.6]	Ciclev10032697m	K01859	0.87	0.83	0.95
	CCoAOMT caffeoyl-CoA O-methyltransferase [EC:2.1.1.104]	Ciclev10029158m	K00588	0.98	0.89	0.81
Stilbenoid, diarylheptanoid and gingerol biosynthesis (ko00945)	E1.14.-.-	Ciclev10031286m	K00517	1.16	1.22	0.95
	CYP98A3 [EC:1.14.13.36]	Ciclev10011520m	K09754	1.32	2.08	0.70
	CCoAOMT caffeoyl-CoA O-methyltransferase [EC:2.1.1.104]	Ciclev10029158m	K00588	0.98	0.89	0.81
Ubiquinone and other terpenoid-quinone biosynthesis(ko00130)	4CL 4-coumarate-CoA ligase [EC:6.2.1.12]	Ciclev10031133m	K01904	1.00	1.14	0.35
Phenylalanine, tyrosine and tryptophan biosynthesis(ko00400)	aroF, aroG, aroH 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]	Ciclev10025342m	K01626	0.78	0.87	1.00
	aroB 3-dehydroquinate synthase [EC:4.2.3.4]	Ciclev10025711m	K01735	0.78	0.87	1.00
	PAT, AAT bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase [EC:2.6.1.1;2.6.1.78;2.6.1.79]	Ciclev10025283m	K15849	1.06	1.22	1.00
	trpE anthranilate synthase component I [EC:4.1.3.27]	Ciclev10028065m	K01657	1.16	1.22	0.95
Citrate cycle (TCA cycle)(ko00020)	pckA phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]	Ciclev10025088m	K01610	0.80	0.87	0.96
Oxidative phosphorylation(ko00190)	NDUFA8 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8	Ciclev10006207m	K03952	0.74	0.79	1.24
	ATPeF1D, ATP5D, ATP16 F-type H + −transporting ATPase subunit delta	Ciclev10022328m	K02134	0.81	0.79	1.05
	NDUFS5 NADH dehydrogenase (ubiquinone) Fe-S protein 5	Ciclev10033216m	K03938	1.13	2.01	0.84
	ATPeF1D, ATP5D, ATP16 F-type H + −transporting ATPase subunit delta	Ciclev10022328m	K02134	0.81	0.79	1.05
	ATPF0A, atpB F-type H + −transporting ATPase subunit a	Ciclev10013984m	K02108	0.94	0.82	0.90

The abbreviations of enzyme are shown through overstriking. The underline expression satisfied with the standard of the differentially expression proteins

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