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Table 2 Summary of the different low density SNP chips simulated

From: Design of low density SNP chips for genotype imputation in layer chicken

Methodology SNP Chip Number of SNP
RI Line L Line
Equidistance 50Kequi 49,636 50,307
40Kequi 40,160 39,838
30Kequi 29,970 30,075
20Kequi 19,910 19,948
15Kequi 14,963 14,955
10Kequi 10,001 9966
7.5Kequi 7527 7496
5Kequi 4991 4996
4Kequi 4023 4000
3Kequi 2992 3003
2Kequi 2013 2003
Linkage Disequilibrium LD0.8 21,717 18,052
LD0.7 16,615 13,696
LD0.6 13,214 10,736
LD0.5 10,711 8626
LD0.4 8521 6944
LD0.3 6875 5578
LD0.2 5371 4330
LD0.1 3935 3232
LD0.05 3205 2624
  1. SNP chips in bold are SNP chips having an equivalent SNP density of 10 K SNPs