From: Design of low density SNP chips for genotype imputation in layer chicken
Ref. pop. | G2 Imputation | G3 Imputation | ||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 (B) | G0 (G) | G2♂ (D1) | G1♂ (H) | G0♂(I) | ||||||
SNP chip | Corr. | SE | Corr. | SE | Corr. | SE | Corr. | SE | Corr. | SE |
10Kequi | 0.961 | 0.063 | 0.952 | 0.072 | 0.953 | 0.076 | 0.936 | 0.098 | 0.940 | 0.089 |
3Kequi | 0.884 | 0.113 | 0.841 | 0.149 | 0.868 | 0.136 | 0.811 | 0.172 | 0.821 | 0.167 |
LD0.5 | 0.975 | 0.045 | 0.973 | 0.046 | 0.973 | 0.047 | 0.965 | 0.057 | 0.967 | 0.051 |
LD0.05 | 0.899 | 0.057 | 0.872 | 0.119 | 0.892 | 0.107 | 0.852 | 0.131 | 0.856 | 0.123 |