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Table 5 Evolution of the mean correlations between true and imputed genotypes according to the degree of kinship between reference population and candidate population, with the imputation of G2 and G3 as candidate population

From: Design of low density SNP chips for genotype imputation in layer chicken

Ref. pop. G2 Imputation G3 Imputation
G1 (B) G0 (G) G2♂ (D1) G1♂ (H) G0♂(I)
SNP chip Corr. SE Corr. SE Corr. SE Corr. SE Corr. SE
10Kequi 0.961 0.063 0.952 0.072 0.953 0.076 0.936 0.098 0.940 0.089
3Kequi 0.884 0.113 0.841 0.149 0.868 0.136 0.811 0.172 0.821 0.167
LD0.5 0.975 0.045 0.973 0.046 0.973 0.047 0.965 0.057 0.967 0.051
LD0.05 0.899 0.057 0.872 0.119 0.892 0.107 0.852 0.131 0.856 0.123