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Table 6 Evolution of the mean correlations between true and imputed genotypes depending on the presence or absence of dams in the reference population

From: Design of low density SNP chips for genotype imputation in layer chicken

Ref. pop. G3 Imputation
G2♂ (D1) G2 (D2)
SNP chip Corr. SE Corr. SE
10Kequi 0.953 0.076 0.983 0.036
3Kequi 0.868 0.136 0.946 0.068
LD0.5 0.973 0.047 0.989 0.026
LD0.05 0.892 0.107 0.953 0.024