ID | Name | Region | Position on genomic | SNP Site (Reverse stand) | Allele | Allele Freq. (Normal pigs/Affect pigs) | HW-test | Chi-square test (P-Value) |
---|---|---|---|---|---|---|---|---|
SNP1 | rs339135425 | Intron4 | Chr2:88207019 | G > A | G | 0.72/0.52 | 0.4566 | 0.001223** |
A | 0.28/0.48 | |||||||
SNP2 | rs344370846 | Intron4 | Chr2:88206832 | G > A | G | 0.87/0.77 | 0.4212 | 0.02992* |
A | 0.13/0.23 | |||||||
SNP3 | rs335396960 | Intron4 | Chr2:88206806 | C > T | C | 0.88/0.76 | 0.4212 | 0.006143** |
T | 0.12/0.24 | |||||||
SNP4 | rs325197091 | Intron4 | Chr2:88206745 | A > G | A | 0.51/0.29 | 0.05079 | 3.032E-05*** |
G | 0.49/0.71 | |||||||
SNP5 | rs342088137 | Intron4 | Chr2:88206700 | C > T | C | 0.88/0.76 | 0.4212 | 0.006143** |
T | 0.12/0.24 | |||||||
SNP6 | rs333077091 | Intron4 | Chr2:88206655 | T > C | T | 0.81/0.67 | 0.0002 | 0.004711** |
C | 0.19/0.33 | |||||||
SNP7 | rs323497886 | Intron4 | Chr2:88206523 | G > A | G | 0.71/0.60 | 0.749 | 0.4179ns |
A | 0.29/0.40 | |||||||
SNP8 | rs332280474 | Intron4 | Chr2:88206451 | C > T | C | 0.50/0.75 | 0.05749 | 3.83E-03** |
T | 0.50/0.25 | |||||||
SNP9 | rs322755731 | Intron4 | Chr2:88206438 | T > G | T | 0.47/0.27 | 0.2829 | 0.00013*** |
G | 0.53/0.73 | |||||||
SNP10 | rs343753765 | Intron4/exon5 | Chr2:88206361 | C > T | C | 0.63/0.54 | 0.7639 | 0.1004ns |
T | 0.37/0.46 | |||||||
SNP11 | rs331422651 | Intron4/exon5 | Chr2:88206349 | C > T | C | 0.88/0.76 | 0.7409 | 0.005049** |
T | 0.12/0.24 | |||||||
SNP12 | rs318637436 | exon5 | Chr2:88206180 | C > T | C | 0.87/0.77 | 0.5831 | 0.08725 |
T | 0.13/0.23 | |||||||
SNP13 | rs344145865 | Intron11 | Chr2:88144031 | G > T | G | 0.48/0.30 | 0.2249 | 0.000729** |
T | 0.51/0.70 | |||||||
SNP14 | rs793766633 | exon12/3’UTR | Chr2:88125722 | - > A/AA/AAA | – | 0.64/0.56 | 2.00E-04 | 0.1589ns |
A | 0.36/0.44 | |||||||
SNP15 | rs792865901 | exon12/3’UTR | Chr2:88125522 | - > TT/TTT/TTTT/TTTTT/TTTTTTT | – | 0.58/0.57 | 1.00E-04 | 0.8211ns |
T | 0.42/0.43 | |||||||
SNP16 | rs711466420 | exon12/3’UTR | Chr2:88124963 | - > T | – | 0.19/0.06 | 1 | 0.001152*** |
T | 0.81/0.94 | |||||||
SNP17 | rs701289492 | exon12/3’UTR | Chr2:88124822 | A > G | A | 0.93/0.95 | 0.501 | 0.6271ns |
G | 0.07/0.05 | |||||||
SNP18 | rs698648923 | exon12/3’UTR | Chr2:88124516 | T > C | T | 0.93/0.95 | 0.5341 | 0.6069ns |
0.07/0.05 | ||||||||
SNP19 | rs709236548 | exon12/3’UTR | Chr2:88123927 | - > AG | – | 0.63/0.42 | 1.60E-07 | 0.0001241*** |
AG | 0.37/0.58 | |||||||
SNP20 | rs336678612 | exon12/3’UTR | Chr2:88123776 | G > A | / | / | / | / |
SNP21 | rs326987887 | exon12/3’UTR | Chr2:88123705 | C > T | / | / | / | / |