Table 1 Comparison of basic Stacks [55] statistics for Arapaima gigas versus a range of other fish species that were generated using the same ddRAD methodology and Stacks parameters
Species | Common name | Family | n° fish | Unique stacks per individual | n° Polymorphic loci (%) | SNPs found | Reference |
|---|---|---|---|---|---|---|---|
Arapaima gigas | Pirarucu | Osteoglossidae | 60 | 6667.9 ± 611.6 | 154.0 ± 103.8 (2.3) F | 192.6 ± 141.4 | Present study |
Dicentrarchus labrax | European seabass | Moronidae | 26 | 6830.9 ± 201.5 | 519.2 ± 522.1 (7.6) E | 1034.7 ± 784.0 | [66] |
Cyprinus carpio | Common carp | Cyprinidae | 85 | 7697.4 ± 1213.4 | 637.6 ± 416.8 (8.3) DE | 868.6 ± 553.9 | Unpublished |
Oreochromis niloticus | Nile tilapia | Cichlidae | 6 | 14,612.8 ± 520.6 | 1796.2 ± 130.0 (12.3) CDE | 2463.3 ± 161.9 | [6] |
Clarias anguillaris | Mudfish | Clariidae | 5 | 9666.0 ± 79.2 | 1356.6 ± 43.2 (14.0) BCD | 1945.4 ± 83.0 | Unpublished |
Sprattus sprattus | European sprat | Clupeidae | 8 | 15,140.6 ± 1561.5 | 2629.5 ± 319.8 (17.4) ABC | 3444.5 ± 441.0 | Unpublished |
Ctenolabrus rupestris | Goldsinny wrasse | Labridae | 20 | 11,817.4 ± 3772.6 | 2217.9 ± 715.6 (18.8) AB | 3129.3 ± 944.5 | [67] |
Melanogrammus aeglefinus | Haddock | Gadidae | 16 | 12,481.8 ± 3255.7 | 2529.1 ± 415.5 (20.3) A | 3349.4 ± 550.2 | Unpublished |